The importance of archaeology before population genomics

Recent paper First encounters in the north: cultural diversity and gene flow in Early Mesolithic Scandinavia, by Manninen et al. Antiquity (2021).

The authors criticize the model laid out in Günther et al. (2018), whereby the origin of the previously defined Mesolithic Scandinavian hunter-gatherer genetic group (SHG) was defined as an admixture between genetically defined WHG and EHG populations that migrated into Scandinavia from two separate Ice Age refugia: the south (WHG) and north (EHG). This dualistic model was further associated with two specific lithic blade technologies present in Early Mesolithic Scandinavia (Sørensen et al. 2013), as summarized … Read the rest “The importance of archaeology before population genomics”

Demic vs. cultural diffusion and patrilineal Megalithic societies

Recent paper A dynastic elite in monumental Neolithic society, by Cassidy et al. Nature (2020) 582:384–388.

Interesting excerpts (emphasis mine):

Neolithic Admixture

We sampled remains from all of the major Irish Neolithic funerary traditions: court tombs, portal tombs, passage tombs, Linkardstown-type burials and natural sites. Within this dataset, the earliest Neolithic human remains from the island—interred at Poulnabrone portal tomb14—are of majority ‘Early_Farmer’ ancestry (as defined by ADMIXTURE modelling), and show no evidence of inbreeding, which implies that, from the very onset, agriculture was accompanied by large-scale maritime colonization. Our ADMIXTURE and ChromoPainter analyses do not distinguish between

… Read the rest

Survival of hunter-gatherer ancestry in West-Central European Neolithic

Recent papers on France and neighbouring regions, Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers, by Rivollat et al. Science Advances (2020) 6(22), and Ancient genomes from present-day France unveil 7,000 years of its demographic history, by Brunel et al. PNAS (2020).

Interesting excerpts (emphasis mine):

I. Survival of HG ancestry in Central Europe

From Rivollat et al. (2020):

Here, we present newly typed genome-wide data from 101 individuals from 12 sites from modern-day France and Germany (3 Late Mesolithic and 98 Neolithic, 7000–3000 cal BCE (…)

We explored

… Read the rest

Earliest R1a-Z93…from Late Trypillia in the Podolian-Volhynian Upland!

Recently, the preprint by Sirak et al. biorXiv (2019), Human auditory ossicles as an alternative optimal source of ancient DNA, was published in Genome Res. (2020), and the corresponding samples were finally uploaded to ENA.

I have been trying to get my hands on sample GLAV_14, a male from the Late Eneolithic site Glăvăneştii Vechi, classified as Romania Bronze Age (ca. 3500-3000 BC), mtDNA T1a1, referenced as investigated first in the study:

Haas N, Maximilian K. 1958. Anthropological study of the human bones from graves with ochre from Glăvăneștii Vechi, Corlăteni and Stoicani Cetățuie. Soviet Anthropology 4,

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Spread of Indo-European and Uralic speakers in ADMIXTURE

The following are updated files for unsupervised ADMIXTURE of most available ancient Eurasian samples with K=7. For reference, see PCA of ancient and modern Eurasian samples.

NOTE. For a precise interpretation of ancestry evolution, be sure to first check the posts on the expansion of “Steppe ancestry”, on the spread of Yamnaya ancestry with Indo-Europeans, and on the evolution of Corded Ware ancestry typical of modern Uralic populations.

ADMIXTURE timeline

This is a YouTube video similar to the one on Indo-Europeans and Y-DNA evolution:

Some comments

I have tried running supervised ADMIXTURE models by selecting

… Read the rest

“Steppe ancestry” step by step (2019): Mesolithic to Early Bronze Age Eurasia

yamnaya-gac-maykop-corded-ware-bell-beaker

The recent update on the Indo-Anatolian homeland in the Middle Volga region and its evolution as the Indo-Tocharian homeland in the Don–Volga area as described in Anthony (2019) has, at last, a strong scientific foundation, as it relies on previous linguistic and archaeological theories, now coupled with ancient phylogeography and genomic ancestry.

There are still some inconsistencies in the interpretation of the so-called “Steppe ancestry”, though, despite the one and a half years that have passed since we first had access to the closest Pontic–Caspian steppe source populations. Even my post “Steppe ancestry” step by step from a year ago … Read the rest ““Steppe ancestry” step by step (2019): Mesolithic to Early Bronze Age Eurasia”

Bell Beakers and Mycenaeans from Yamnaya; Corded Ware from the forest steppe

I have recently written about the spread of Pre-Yamnaya or Yamnaya ancestry and Corded Ware-related ancestry throughout Eurasia, using exclusively analyses published by professional geneticists, and filling in the gaps and contradictory data with the most reasonable interpretations. I did so consciously, to avoid any suspicion that I was interspersing my own data or cherry picking results.

Now I’m finished recapitulating the known public data, and the only way forward is the assessment of these populations using the available datasets and free tools.

Understanding the complexities of qpAdm is fairly difficult without a proper genetic and statistical background, which I … Read the rest “Bell Beakers and Mycenaeans from Yamnaya; Corded Ware from the forest steppe”

Yamnaya ancestry: mapping the Proto-Indo-European expansions

The latest papers from Ning et al. Cell (2019) and Anthony JIES (2019) have offered some interesting new data, supporting once more what could be inferred since 2015, and what was evident in population genomics since 2017: that Proto-Indo-Europeans expanded under R1b bottlenecks, and that the so-called “Steppe ancestry” referred to two different components, one – Yamnaya or Steppe_EMBA ancestry – expanding with Proto-Indo-Europeans, and the other one – Corded Ware or Steppe_MLBA ancestry – expanding with Uralic speakers.

The following maps are based on formal stats published in the papers and supplementary materials from 2015 until today, mainly on … Read the rest “Yamnaya ancestry: mapping the Proto-Indo-European expansions”

Corded Ware ancestry in North Eurasia and the Uralic expansion

Now that it has become evident that Late Repin (i.e. Yamnaya/Afanasevo) ancestry was associated with the migration of R1b-L23-rich Late Proto-Indo-Europeans from the steppe in the second half of the the 4^th millennium BC, there’s still the question of how R1a-rich Uralic speakers of Corded Ware ancestry expanded , and how they spread their languages throughout North Eurasia.

Modern North Eurasians

I have been collecting information from the supplementary data of the latest papers on modern and ancient North Eurasian peoples, including Jeong et al. (2019), Saag et al. (2019), Sikora et al. (2018), or … Read the rest “Corded Ware ancestry in North Eurasia and the Uralic expansion”