Category: Population Genomics

Updated phylogenetic tree of haplogroup Q-M242 points to Palaeolithic expansions

palaeo-siberian-haplogroup-y-dna

New paper (behind paywall) Paternal origin of Paleo-Indians in Siberia: insights from Y-chromosome sequences by Wei et al., Eur. J. Hum. Genet. (2018)

Interesting excerpts (for Eurasian migrations):

Differentiation and diffusion in Palaeolithic Siberia

Based on the phylogenetic analyses and the current distributions of relative sub-lineages, we propose that the prehistoric population differentiation in Siberia after the LGM (post-LGM) provided the genetic basis for the emergence of the Paleo-Indian, American aborigine, population. According to the phylogenetic tree of Y-chromosome haplogroup C2-M217 (Fig. 2 and Figure S1), eight sub-lineages emerged in a short period between 15.3 kya and 14.3 kya

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When Bell Beakers mixed with Eneolithic Europeans: Pömmelte and the Europe-wide concept of sanctuary

pommelte-enclosure

Recent open access paper The ring sanctuary of Pömmelte, Germany: a monumental, multi-layered metaphor of the late third millennium BC, by Spatzier and Bertemes, Antiquity (2018) 92(363):655-673.

Interesting excerpts (emphasis mine):

In recent decades, evidence has accumulated for comparable enclosures of later dates, including the Early Bronze Age Únětice Culture between 2200 and 1600 BC, and thus into the chronological and cultural context of the Nebra sky disc. Based on the analysis of one of these enclosure sites, recently excavated at Pömmelte on the flood plain of the Elbe River near Magdeburg, Saxony-Anhalt, and dating to the late third

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Mitogenomes from the middle of the Merovingian period in the Lorraine region

herange-burial

Investigating the kinship between individuals deposited in exceptional Merovingian multiple burials through aDNA analysis: The case of Hérange burial 41 (Northeast France), by Deguilloux et al. Journal of Archaeological Science: Reports (2018) 20:784-790.

Interesting excerpts (emphasis mine):

The Merovingian period in Northeast France (developing from 440/450 to 700/710 CE; Legoux et al., 2004) represents [a case of multiple burial], where a large majority of the types of deposits encountered consists of individual burials. In this context, whereas hundreds of individual burials are known, the syntheses recently conducted have enabled the inventory of only six multiple burials (Lefebvre and Lafosse,

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South-East Asia samples include shared ancestry with Jōmon

pca-south-east-asia-jomon

New paper (behind paywall) The prehistoric peopling of Southeast Asia, by McColl et al. (Science 2018) 361(6397):88-92 from a recent bioRxiv preprint.

Interesting is this apparently newly reported information including a female sample from the Ikawazu Jōmon of Japan ca. 570 BC (emphasis mine):

The two oldest samples — Hòabìnhians from Pha Faen, Laos [La368; 7950 with 7795 calendar years before the present (cal B.P.)] and Gua Cha, Malaysia (Ma911; 4415 to 4160 cal B.P.)—henceforth labeled “group 1,” cluster most closely with present-day Önge from the Andaman Islands and away from other East Asian and Southeast-Asian populations (Fig.

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Expansion of domesticated goat echoes expansion of early farmers

goat-neolithic

New paper (behind paywall) Ancient goat genomes reveal mosaic domestication in the Fertile Crescent, by Daly et al. Science (2018) 361(6397):85-88.

Interesting excerpts (emphasis mine):

Thus, our data favor a process of Near Eastern animal domestication that is dispersed in space and time, rather than radiating from a central core (3, 11). This resonates with archaeozoological evidence for disparate early management strategies from early Anatolian, Iranian, and Levantine Neolithic sites (12, 13). Interestingly, our finding of divergent goat genomes within the Neolithic echoes genetic investigation of early farmers. Northwestern Anatolian and Iranian human Neolithic genomes are also divergent (14–16),

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About Scepters, Horses, and War: on Khvalynsk migrants in the Caucasus and the Danube

steppe-horse-sceptre-khvalynsk

dergachev-scepters-khavlynsk-horsesAbout two months ago I stumbled upon a gem in archaeological studies related to Proto-Indo-Europeans, the book О скипетрах, о лошадях, о войне: этюды в защиту миграционной концепции М.Гимбутас (On sceptres, on horses, on war: Studies in defence of M. Gimbutas’ migration concepts), 2007, by V. A. Dergachev, from the Institute of Cultural Heritage of the Moldavian Republic.

Dergachev’s work dedicates 488 pages to a very specific Final Neolithic-Eneolithic period in the Pontic-Caspian steppe, and the most relevant parts of the book concern the nature and expansion of horses and horse domestication, horse-head scepters, and other horse-related symbology… Read the rest “About Scepters, Horses, and War: on Khvalynsk migrants in the Caucasus and the Danube”

Inca and Spanish Empires had a profound impact on Peruvian demography

peru-population-history

Open access Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire by Harris et al., PNAS (2018) 201720798 (published ahead of print).

Abstract (emphasis mine):

Native Americans from the Amazon, Andes, and coastal geographic regions of South America have a rich cultural heritage but are genetically understudied, therefore leading to gaps in our knowledge of their genomic architecture and demographic history. In this study, we sequence 150 genomes to high coverage combined with an additional 130 genotype array samples from Native American and mestizo populations in Peru. The majority of our samples possess greater than 90% Native

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Wang et al. (2018) Suppl. data: R1b-M269 in Baltic Neolithic?

eneolithic-forest-zone

Looking for information on Novosvobodnaya samples from Wang et al. (2018) for my latest post, I stumbled upon this from the Supplementary Data 2 (download the Excel table):

Latvia_MN1.SG (ZVEJ26)

Skeletal element: petrous
Sample: Latvia_MN_dup.I4627.SG
Date: 4251-3976 calBCE
Location: Zvejnieki
mtDNA: U4a1
Y-DNA: R1b1a1a2
Coverage: 0.15
SNPs hit on autosomes: 167445

The data on Mathieson et al. (2018) is as follows:

I4627 (ZVEJ26)

Skeletal element: petrous
Origin: ThisStudy (New data; Individual first published in JonesNatureCommunications2017)
Sample: Latvia_MN
Date:4251-3976 calBCE (5280±55 BP, Ua-3639)
Location:Zvejnieki
mtDNA: U4a1
Y-DNA: R1b1a1a(xR1b1a1a2)
Coverage: 1.77
SNPs hit on autosomes: 686273

Y-Chromosome derived SNPs: R1b1a1a:PF6475:17986687C-

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Recent Africa origin with hybridization, and back to Africa 70,000 years ago

mtdna-l-out-of-africa-expansion

Open access Carriers of mitochondrial DNA macrohaplogroup L3 basal lineages migrated back to Africa from Asia around 70,000 years ago, by Cabrera et al. BMC Evol Biol (2018) 18(98).

Abstract (emphasis mine):

Background

The main unequivocal conclusion after three decades of phylogeographic mtDNA studies is the African origin of all extant modern humans. In addition, a southern coastal route has been argued for to explain the Eurasian colonization of these African pioneers. Based on the age of macrohaplogroup L3, from which all maternal Eurasian and the majority of African lineages originated, the out-of-Africa event has been dated around 60-70

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