Mitochondrial DNA unsuitable to test for IBD, and undersampling genomes show biased time and rate estimates

Two interesting papers questioning previous methods have been published.

Open access Mitochondrial DNA is unsuitable to test for isolation by distance, by Teske et al. Scientific Reports (2018) 8:8448.

Abstract (emphasis mine):

Tests for isolation by distance (IBD) are the most commonly used method of assessing spatial genetic structure. Many studies have exclusively used mitochondrial DNA (mtDNA) sequences to test for IBD, but this marker is often in conflict with multilocus markers. Here, we report a review of the literature on IBD, with the aims of determining (a) whether significant IBD is primarily a result of lumping spatially discrete

… Read the rest

FADS1 and the timing of human adaptation to agriculture

Open access FADS1 and the timing of human adaptation to agriculture, by Sara Mathieson & Iain Mathieson, bioRxiv (2018).

Abstract:

Variation at the FADS1/FADS2 gene cluster is functionally associated with differences in lipid metabolism and is often hypothesized to reflect adaptation to an agricultural diet. Here, we test the evidence for this relationship using both modern and ancient DNA data. We document pre-out-of-Africa selection for both the derived and ancestral FADS1 alleles and show that almost all the inhabitants of Europe carried the ancestral allele until the derived allele was introduced approximately 8,500 years ago by Early Neolithic farming

… Read the rest

On applications of space-time modelling with 14C age calibration

Open access On Applications of Space–Time Modelling with Open-Source 14C Age Calibration, by T. Rowan McLaughlin J Archaeol Method Theory (2018).

Abstract (emphasis mine):

In archaeology, the meta-analysis of scientific dating information plays an ever-increasing role. A common thread among many recent studies contributing to this has been the development of bespoke software for summarizing and synthesizing data, identifying significant patterns therein. These are reviewed in this paper, which also contains open-source scripts for calibrating radiocarbon dates and modelling them in space and time, using the R computer language and GRASS GIS. The case studies that undertake new analysis

… Read the rest

The Danube Corridor Hypothesis and the Carpathian Basin in the Aurignacian

Open access review, The Danube Corridor Hypothesis and the Carpathian Basin: Geological, Environmental and Archaeological Approaches to Characterizing Aurignacian Dynamics, by Wei Chu, J World Prehist (2018).

Abstract (emphasis mine):

Early Upper Paleolithic sites in the Danube catchment have been put forward as evidence that the river was an important conduit for modern humans during their initial settlement of Europe. Central to this model is the Carpathian Basin, a region covering most of the Middle Danube. As the archaeological record of this region is still poorly understood, this paper aims to provide a contextual assessment of the Carpathian Basin’s

… Read the rest

Ancient human parallel lineages within North America contributed to a coastal expansion

New paper (behind paywall), Ancient human parallel lineages within North America contributed to a coastal expansion, by Scheib et al. Science (2018) 360(6392):1024-1027.

Abstract:

Little is known regarding the first people to enter the Americas and their genetic legacy. Genomic analysis of the oldest human remains from the Americas showed a direct relationship between a Clovis-related ancestral population and all modern Central and South Americans as well as a deep split separating them from North Americans in Canada. We present 91 ancient human genomes from California and Southwestern Ontario and demonstrate the existence of two distinct ancestries in North

… Read the rest

Reproductive success among ancient Icelanders stratified by ancestry

New paper (behind paywall), Ancient genomes from Iceland reveal the making of a human population, by Ebenesersdóttir et al. Science (2018) 360(6392):1028-1032.

Abstract and relevant excerpts (emphasis mine):

Opportunities to directly study the founding of a human population and its subsequent evolutionary history are rare. Using genome sequence data from 27 ancient Icelanders, we demonstrate that they are a combination of Norse, Gaelic, and admixed individuals. We further show that these ancient Icelanders are markedly more similar to their source populations in Scandinavia and the British-Irish Isles than to contemporary Icelanders, who have been shaped by 1100 years of

… Read the rest

On Latin, Turkic, and Celtic – likely stories of mixed societies and little genetic impact

Recent article on The Conversation, The Roman dead: new techniques are revealing just how diverse Roman Britain was, about the paper (behind paywall) A Novel Investigation into Migrant and Local Health-Statuses in the Past: A Case Study from Roman Britain, by Redfern et al. Bioarchaeology International (2018), among others.

Interesting excerpts about Roman London:

We have discovered, for example, that one middle-aged woman from the southern Mediterranean has black African ancestry. She was buried in Southwark with pottery from Kent and a fourth century local coin – her burial expresses British connections, reflecting how people’s communities and lives

… Read the rest

Mitogenomes from Thailand offer insights into maternal genetic history of mainland South-East Asia

Open access New insights from Thailand into the maternal genetic history of Mainland Southeast Asia, by Kutanan et al. Eur. J. Hum. Genet. (2018) 26:898–911

Abstract (emphasis mine):

Tai-Kadai (TK) is one of the major language families in Mainland Southeast Asia (MSEA), with a concentration in the area of Thailand and Laos. Our previous study of 1234 mtDNA genome sequences supported a demic diffusion scenario in the spread of TK languages from southern China to Laos as well as northern and northeastern Thailand. Here we add an additional 560 mtDNA genomes from 22 groups, with a focus on the

… Read the rest

Climatic conditions in the Cis-Ural Steppe region and the Repin culture

New paper (behind paywall) Climate and Vegetation Changes over the Past 7000 Years in the Cis-Ural Steppe, by Khokhlova, Morgunova, Khokhlov, and Gol’eva, Eurasian Soil Sc. (2018) 51: 506.

Abstract (emphasis mine):

A multilayered archaeological site Turganik Settlement in the valley of the Tok River in the Cis- Ural steppe (Orenburg oblast) was examined with the use of paleopedological and microbiomorph methods. Ancient people inhabited this area in the Latest Neolithic (Eneolithic) (5th millennium BC) and Early Bronze (4th millennium BC) ages. It was found that cultural layers dating back to the Atlantic period of the Holocene had been

… Read the rest