Two sources of archaic Denisovan ancestry in East Asia, one possibly after the isolation of Native Americans

Open access paper Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture, by Sharon L. Browning, Brian L. Browning, Zhou, Tucci, & Akey, Cell (2018).

Summary:

Anatomically modern humans interbred with Neanderthals and with a related archaic population known as Denisovans. Genomes of several Neanderthals and one Denisovan have been sequenced, and these reference genomes have been used to detect introgressed genetic material in present-day human genomes. Segments of introgression also can be detected without use of reference genomes, and doing so can be advantageous for finding introgressed segments that are less closely related to the

… Read the rest

Iberian prehistoric migrations in Genomics from Neolithic, Chalcolithic, and Bronze Age

New open access paper Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia, by Valdiosera, Günther, Vera-Rodríguez, et al. PNAS (2018) published ahead of print.

Abstract (emphasis mine)

Population genomic studies of ancient human remains have shown how modern-day European population structure has been shaped by a number of prehistoric migrations. The Neolithization of Europe has been associated with large-scale migrations from Anatolia, which was followed by migrations of herders from the Pontic steppe at the onset of the Bronze Age. Southwestern Europe was one of the last parts of

… Read the rest

Signal of recent positive selection for African ancestry in the admixed population of Madagascar

Open Access Strong selection during the last millennium for African ancestry in the admixed population of Madagascar, by Pierron, Heiske, Razafindrazaka, et al. Nature Communications (2018) 9: 932.

Abstract (emphasis mine):

While admixed populations offer a unique opportunity to detect selection, the admixture in most of the studied populations occurred too recently to produce conclusive signals. By contrast, Malagasy populations originate from admixture between Asian and African populations that occurred ~27 generations ago, providing power to detect selection. We analyze local ancestry across the genomes of 700 Malagasy and identify a strong signal of recent positive selection,

… Read the rest

The concept of “Outlier” in Human Ancestry (III): Late Neolithic samples from the Baltic region and origins of the Corded Ware culture

I have written before about how the Late Neolithic sample from Zvejnieki seemed to be an outlier among Corded Ware samples (read also the Admixture analysis section on the IEDDM), due to its position in PCA, even more than its admixture components or statistical comparison might show.

In the recent update to Northern European samples in Mittnik et al. (2018), an evaluation of events similar to the previous preprint (2017) is given:

Computing D-statistics for each individual of the form D(Baltic LN, Yamnaya; X, Mbuti), we find that the two individuals from the early phase of the

… Read the rest

Admixture of Srubna and Huns in Hungarian conquerors

New preprint at BioRxiv, Mitogenomic data indicate admixture components of Asian Hun and Srubnaya origin in the Hungarian Conquerors, by Neparáczki et al. (2018), at BioRxiv.

Abstract (emphasis mine):

It has been widely accepted that the Finno-Ugric Hungarian language, originated from proto Uralic people, was brought into the Carpathian Basin by the Hungarian Conquerors. From the middle of the 19th century this view prevailed against the deep-rooted Hungarian Hun tradition, maintained in folk memory as well as in Hungarian and foreign written medieval sources, which claimed that Hungarians were kinsfolk of the Huns. In order to shed light on

… Read the rest

Differences in ADMIXTURE between Khvalynsk/Yamna and Sredni Stog/Corded Ware

Looking for differences among steppe cultures in Genomics is like looking for a needle in a haystack.

It means, after all, looking for differences among closely related cultures, such as between South-Western and North-Western Anatolian Neolithic cultures, or among Old European cultures (such as Vinča or Cucuteni–Trypillia), or between Iberian cultures after the arrival of steppe-related populations.

These differences between closely related regions, in all these cases and especially among steppe cultures, even when they are supported by Archaeology and anthropological models of migration (and compatible with linguistic models), are expected to be minimal.

Fortunately, we have … Read the rest “Differences in ADMIXTURE between Khvalynsk/Yamna and Sredni Stog/Corded Ware”

Genomic history of Northern Eurasians includes East-West and North-South gradients

Open Access article on modern populations (including ancient samples), Between Lake Baikal and the Baltic Sea: genomic history of the gateway to Europe, by Triska et al., BMC Genetics 18(Suppl 1):110, 2017.

Abstract:

Background
The history of human populations occupying the plains and mountain ridges separating Europe from Asia has been eventful, as these natural obstacles were crossed westward by multiple waves of Turkic and Uralic-speaking migrants as well as eastward by Europeans. Unfortunately, the material records of history of this region are not dense enough to reconstruct details of population history. These considerations stimulate growing interest to obtain

… Read the rest

Review article on the origin of modern humans: the multiple-dispersal model and Late Pleistocene Asia

Review article On the origin of modern humans: Asian perspectives, by Christopher J. Bae, Katerina Douka, and Michael D. Petraglia, Science (2017)

Abstract:

BACKGROUND
The earliest fossils of Homo sapiens are located in Africa and dated to the late Middle Pleistocene. At some point later, modern humans dispersed into Asia and reached the far-away locales of Europe, Australia, and eventually the Americas. Given that Neandertals, Denisovans, mid-Pleistocene Homo, and H. floresiensis were present in Asia before the appearance of modern humans, the timing and nature of the spread of modern humans across Eurasia continue to be subjects of intense

… Read the rest

The concept of “Outlier” in Human Ancestry (II): Early Khvalynsk, Sredni Stog, West Yamna, Iron Age Bulgaria, Potapovka, Andronovo…

I already wrote about the concept of outlier in Human Ancestry, so I am not going to repeat myself. This is just an update of “outliers” in recent studies, and their potential origins (here I will repeat some of the examples):

Early Khvalynsk: the three samples from the Samara region have quite different positions in PCA, from nearest to EHG (of Y-DNA haplogroup R1a) to nearest to ANE ancestry (of Y-DNA haplogroup Q). This could represent the initial consequences of the second wave of ANE ancestry – as found later in Yamna samples from a neighbouring region -, … Read the rest “The concept of “Outlier” in Human Ancestry (II): Early Khvalynsk, Sredni Stog, West Yamna, Iron Age Bulgaria, Potapovka, Andronovo…”