Canid Y-chromosome phylogeny reveals distinct haplogroups among Neolithic European dogs

Open access Analysis of the canid Y-chromosome phylogeny using short-read sequencing data reveals the presence of distinct haplogroups among Neolithic European dogs, by Oetjens et al., BMC Genomics (2018) 19:350.

Interesting excerpts (modified for clarity, emphasis mine):

Introduction

Canid mitochondrial phylogenies show that dogs and wolves are not reciprocally monophyletic. The mitochondrial tree contains four deeply rooted clades encompassing dogs and many grey wolf groups. These four clades form the basis of dog mitochondrial haplogroup assignment, known as haplogroups A-D. The time of the most recent common ancestor (TMRCA) of haplogroups A-D significantly predates estimates for domestication based on

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Shared ancestry of ancient Eurasian hepatitis B virus diversity linked to Bronze Age steppe

Ancient hepatitis B viruses from the Bronze Age to the Medieval period, by Mühlemann et al., Science (2018) 557:418–423.

NOTE. You can read the PDF at Dalia Pokutta’s Academia.edu account.

Abstract (emphasis):

Hepatitis B virus (HBV) is a major cause of human hepatitis. There is considerable uncertainty about the timescale of its evolution and its association with humans. Here we present 12 full or partial ancient HBV genomes that are between approximately 0.8 and 4.5 thousand years old. The ancient sequences group either within or in a sister relationship with extant human or other ape HBV clades. Generally,

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Male-biased expansions and migrations also observed in Northwestern Amazonia

Open access preprint Cultural Innovations influence patterns of genetic diversity in Northwestern Amazonia, by Arias et al., bioRxiv (2018).

Abstract (emphasis mine):

Human populations often exhibit contrasting patterns of genetic diversity in the mtDNA and the non-recombining portion of the Y-chromosome (NRY), which reflect sex-specific cultural behaviors and population histories. Here, we sequenced 2.3 Mb of the NRY from 284 individuals representing more than 30 Native-American groups from Northwestern Amazonia (NWA) and compared these data to previously generated mtDNA genomes from the same groups, to investigate the impact of cultural practices on genetic diversity and gain new insights about

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Ancient genomes from North Africa evidence Neolithic migrations to the Maghreb

BioRxiv preprint now published (behind paywall) Ancient genomes from North Africa evidence prehistoric migrations to the Maghreb from both the Levant and Europe, by Fregel et al., PNAS (2018).

NOTE. I think one of the important changes in this version compared to the preprint is the addition of the recent Iberomaurusian samples.

Abstract (emphasis mine):

The extent to which prehistoric migrations of farmers influenced the genetic pool of western North Africans remains unclear. Archaeological evidence suggests that the Neolithization process may have happened through the adoption of innovations by local Epipaleolithic communities or by demic diffusion from the

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North Asian mitogenomes hint at the arrival of pastoralists from West to East ca. 2800-1000 BC

Open access Investigating Holocene human population history in North Asia using ancient mitogenomes, by Kılınç et al., Scientific Reports (2018) 8: 8969.

Abstract (emphasis mine):

Archaeogenomic studies have largely elucidated human population history in West Eurasia during the Stone Age. However, despite being a broad geographical region of significant cultural and linguistic diversity, little is known about the population history in North Asia. We present complete mitochondrial genome sequences together with stable isotope data for 41 serially sampled ancient individuals from North Asia, dated between c.13,790 BP and c.1,380 BP extending from the Palaeolithic to the Iron Age. Analyses … Read the rest “North Asian mitogenomes hint at the arrival of pastoralists from West to East ca. 2800-1000 BC”

Pre-Germanic born out of a Proto-Finnic substrate in Scandinavia

A commenter, Old Europe, drew my attention to the Uralic (Finnic-Saamic) substrate in Germanic proposed by Schrijver in Chapter V. Origins of Language Contact and the Origins of the Germanic Languages, Routledge (2014).

I wanted to share here some interesting excerpts (emphasis mine):

NOTE. I have avoided many detailed linguistic discussions. You should read the whole chapter to check them out.

The origins of the Germanic subfamily of Indo-European cannot be understood without acknowledging its interactions with a language group that has been its long-time neighbour: the Finnic subgroup of the Uralic language family. Indo-European and Uralic are

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Domesticated horse population structure, selection, and mtDNA geographic patterns

Open access Detecting the Population Structure and Scanning for Signatures of Selection in Horses (Equus caballus) From Whole-Genome Sequencing Data, by Zhang et al, Evolutionary Bioinformatics (2018) 14:1–9.

Abstract (emphasis mine):

Animal domestication gives rise to gradual changes at the genomic level through selection in populations. Selective sweeps have been traced in the genomes of many animal species, including humans, cattle, and dogs. However, little is known regarding positional candidate genes and genomic regions that exhibit signatures of selection in domestic horses. In addition, an understanding of the genetic processes underlying horse domestication, especially the origin of Chinese native

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Oldest bubonic plague genome decoded in Srubna ca. 3800 YBP

New open access paper from the Max Planck Institute: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague, by Spyrou et al., Nature Communications (2018) 9:2234.

Interesting excerpts from the paper and supplementary materials (emphasis mine):

Here, we analyse material from the Mikhailovsky II burial site, which was excavated in 2015 and is one of numerous kurgan cemeteries identified in the Samara Oblast. It consists of seven kurgan burials, and is chronologically associated to the ‘Pokrovka’ phase (3,900-3,750 BP) of the ‘Srubnaya’ culture (3,850-3,150 BP) (radiocarbon dates produced in this study provided in Supplementary Table

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The future of the Reich Lab’s studies and interpretations of Late Indo-European migrations

Short report on advances in Genomics, and on the Reich Lab:

Some interesting details:

The Lab is impressive. I would never dream of having something like this at our university. I am really jealous of that working environment.
They are currently working on population transformations in Italy; I hope we can have at last Italic and Etruscan samples.
It is always worth it to repeat that we are all the source of multiple admixture events, many of them quite recent; and I liked the Star Wars simile.
Also, some names hinting at potential new samples?? Zajo-I, Chanchan, Gurulde?, Володарка

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