Ancient phylogeography: spread of haplogroups R1b, R1a and N

The previous post showed the potential use of TreeToM to visualize ancient DNA samples in maps together with their Y-DNA phylogenetic trees. I have written Newick trees for Y-chromosome haplogroups R1b-L388 (encompassing R-V1636 and R-P297, which in turn split into R-M73 and R-M269), R1a, and N.

I have reviewed some of the BAM files from my previous bulk analyses with YLeaf v.2, to add information that I had not previously included in the All Ancient DNA Dataset, and which might be relevant to the proper depiction of phylogenetic trees; in particular, positive and negative SNPs potentially distinguishing archaic… Read the rest “Ancient phylogeography: spread of haplogroups R1b, R1a and N”

Yekaterinovsky Cape, a link between the Samara culture and early Khvalynsk

We already had conflicting information about the elite individual from the Yekaterinovsky Cape and the materials of his grave, which seemed quite old:

For the burial of 45 in the laboratory of the University of Pennsylvania, a 14C date was obtained: PSUAMS-2880 (Sample ID 16068)30 kDa gelatin Russia. 12, Ekaterinovka Grave 45 ¹⁴C age (BP) 6325 ± 25 δ ¹³C (‰) –23.6 δ¹⁵ N (‰) 14.5. The results of dating suggest chronological proximity with typologically close materials from Yasinovatsky and Nikolsky burial grounds (Telegini et al. 2001: 126). The date obtained also precedes the existing dates

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Wang et al. (2018) Suppl. data: R1b-M269 in Baltic Neolithic?

Looking for information on Novosvobodnaya samples from Wang et al. (2018) for my latest post, I stumbled upon this from the Supplementary Data 2 (download the Excel table):

Latvia_MN1.SG (ZVEJ26)

Skeletal element: petrous
Sample: Latvia_MN_dup.I4627.SG
Date: 4251-3976 calBCE
Location: Zvejnieki
mtDNA: U4a1
Y-DNA: R1b1a1a2
Coverage: 0.15
SNPs hit on autosomes: 167445

The data on Mathieson et al. (2018) is as follows:

I4627 (ZVEJ26)

Skeletal element: petrous
Origin: ThisStudy (New data; Individual first published in JonesNatureCommunications2017)
Sample: Latvia_MN
Date:4251-3976 calBCE (5280±55 BP, Ua-3639)
Location:Zvejnieki
mtDNA: U4a1
Y-DNA: R1b1a1a(xR1b1a1a2)
Coverage: 1.77
SNPs hit on autosomes: 686273

Y-Chromosome derived SNPs: R1b1a1a:PF6475:17986687C-

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Sahara’s rather pale-green and discontinuous Sahelo-Sudanian steppe corridor, and the R1b – Afroasiatic connection

Interesting new paper (behind paywall) Megalakes in the Sahara? A Review, by Quade et al. (2018).

Abstract (emphasis mine):

The Sahara was wetter and greener during multiple interglacial periods of the Quaternary, when some have suggested it featured very large (mega) lakes, ranging in surface area from 30,000 to 350,000 km2. In this paper, we review the physical and biological evidence for these large lakes, especially during the African Humid Period (AHP) 11–5 ka. Megalake systems from around the world provide a checklist of diagnostic features, such as multiple well-defined shoreline benches, wave-rounded beach gravels where coarse material is

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Genetic history of admixture across inner Eurasia; Botai shows R1b-M73

Open access Characterizing the genetic history of admixture across inner Eurasia, by Jeong et al. (2018).

Abstract (emphasis mine):

The indigenous populations of inner Eurasia, a huge geographic region covering the central Eurasian steppe and the northern Eurasian taiga and tundra, harbor tremendous diversity in their genes, cultures and languages. In this study, we report novel genome-wide data for 763 individuals from Armenia, Georgia, Kazakhstan, Moldova, Mongolia, Russia, Tajikistan, Ukraine, and Uzbekistan. We furthermore report genome-wide data of two Eneolithic individuals (~5,400 years before present) associated with the Botai culture in northern Kazakhstan. We find that inner Eurasian populations

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Palaeolithic and Mesolithic connections between Italy and the Balkans, and the potential expansion of the Villabruna cluster and haplogroup R1b in Europe

My speculative bet on the arrival of haplogroup R1b to Europe (and the expansion of R1b-V88 to Africa through southern Italy) was based initially entirely on genomic (especially phylogeographic) finds, but judging by data on the latest papers on south-eastern Europe it seems to have been the right choice.

Archaeological information on these prehistoric periods is scarce – compared to more recent times -, and anthropological models of migration are therefore speculative. Some information on the potential periods for its expansion are contained in the chapter Social Networks and Connectivity among the Palaeolithic and Mesolithic Foragers of the … Read the rest “Palaeolithic and Mesolithic connections between Italy and the Balkans, and the potential expansion of the Villabruna cluster and haplogroup R1b in Europe”