Afanasievo ancestry reached Lake Baikal; Nganasan ancestry origins still at large


New paper (behind paywall) Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia, by Yu et al. Cell (2020)

Interesting excerpts (emphasis mine, paragraphs subdivided for clarity):

Population Structure (PCA)

Most of the Lake Baikal individuals occupied the space on a “ANE-NEA” cline running between “Northeast Asian” (NEA) ancestry represented by Neolithic hunter-gathers from the Devil’s Gate in the Russian Far East (Sikora et al., 2019, Siska et al., 2017), and the ANE ancestry represented by Upper Paleolithic Siberian individuals MA1, AfontovaGora 2 (AG2), and AfontovaGora 3 (AG3) (Fu et al., 2016, Raghavan et al.,

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R1b-rich Proto-Indo-Europeans show genetic continuity in Asia


Another preprint came out at the same time as Wang et al. (2020), from the Jena Lab of the Max Planck Society: A dynamic 6,000-year genetic history of Eurasia’s Eastern Steppe, by Jeong, Warinner, et al. bioRxiv (2020).

NOTE. I have now updated the Ancient DNA Dataset, the Prehistory Atlas – with PDF and GIS files including Y-DNA and mtDNA of all newly reported samples (starting with the Neolithic) – as well as the PCA files with those from Wang et al. (2020).

The conclusions are similar, but with some interesting twists. Relevant excerpts (emphasis mine), … Read the rest “R1b-rich Proto-Indo-Europeans show genetic continuity in Asia”

Yamnaya-like Chemurchek links Afanasievo with Iron Age Tocharians


New preprint by the Jena-Reich labs, The Genomic Formation of Human Populations in East Asia, by Wang et al. bioRxiv (2020).

Interesting excerpts (emphasis mine):

Mongolia Neolithic cluster

The three most ancient individuals of the Mongolia ‘East’ cluster are from the Kherlen River region of eastern Mongolia (Tamsag-Bulag culture) and date to 6000-4300 BCE (this places them in the Early Neolithic period, which in Northeast Asia is defined by the use of pottery and not by agriculture). These individuals are genetically similar to previously reported Neolithic individuals from the cis-Baikal region and have minimal evidence of West Eurasian-related admixture

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Earliest R1a-Z93…from Late Trypillia in the Podolian-Volhynian Upland!


Recently, the preprint by Sirak et al. biorXiv (2019), Human auditory ossicles as an alternative optimal source of ancient DNA, was published in Genome Res. (2020), and the corresponding samples were finally uploaded to ENA.

I have been trying to get my hands on sample GLAV_14, a male from the Late Eneolithic site Glăvăneştii Vechi, classified as Romania Bronze Age (ca. 3500-3000 BC), mtDNA T1a1, referenced as investigated first in the study:

Haas N, Maximilian K. 1958. Anthropological study of the human bones from graves with ochre from Glăvăneștii Vechi, Corlăteni and Stoicani Cetățuie. Soviet Anthropology 4,

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Ancient phylogeography: spread of haplogroups R1b, R1a and N


The previous post showed the potential use of TreeToM to visualize ancient DNA samples in maps together with their Y-DNA phylogenetic trees. I have written Newick trees for Y-chromosome haplogroups R1b-L388 (encompassing R-V1636 and R-P297, which in turn split into R-M73 and R-M269), R1a, and N.

I have reviewed some of the BAM files from my previous bulk analyses with YLeaf v.2, to add information that I had not previously included in the All Ancient DNA Dataset, and which might be relevant to the proper depiction of phylogenetic trees; in particular, positive and negative SNPs potentially distinguishing archaicRead the rest “Ancient phylogeography: spread of haplogroups R1b, R1a and N”

Visualizing phylogenetic trees of ancient DNA in a map


Yesterday the Eaton Lab at Columbia University announced on Twitter a nifty little tool by Carlos Alonso Maya-Lastra called TreeToM, which accepts Newick trees and CSV latitude/longitude data to explore phylogeny and geography interactively, with no coding required.

I thought it could complement nicely my All Ancient DNA Dataset, particularly for those newly described SNPs (FTDNA private variants, etc.) that have not been incorporated yet into SNP Tracker.

Here are two examples with snippets to copy&paste to the appropriate boxes in TreeToM. Feel free to add others in the comments:… Read the rest “Visualizing phylogenetic trees of ancient DNA in a map”

The expansion of Indo-Europeans in Y-chromosome haplogroups


I have compiled for two years now the reported Y-DNA and mtDNA haplogroups of ancient DNA samples published, including also SNPs from analysis of the BAM files by hobbyists.

Y-DNA timeline

Here is a video with a timeline of the evolution of Indo-European speakers, according to what is known today about reconstructed languages, prehistoric cultures and ancient DNA:

NOTE. The video is best viewed in HD 1080p (1920×1080) with a display that allows for this or greater video quality, and a screen big enough to see haplogroup symbols, i.e. tablet or greater. The YouTube link is here. The Read the rest “The expansion of Indo-Europeans in Y-chromosome haplogroups”

“Steppe ancestry” step by step (2019): Mesolithic to Early Bronze Age Eurasia


The recent update on the Indo-Anatolian homeland in the Middle Volga region and its evolution as the Indo-Tocharian homeland in the Don–Volga area as described in Anthony (2019) has, at last, a strong scientific foundation, as it relies on previous linguistic and archaeological theories, now coupled with ancient phylogeography and genomic ancestry.

There are still some inconsistencies in the interpretation of the so-called “Steppe ancestry”, though, despite the one and a half years that have passed since we first had access to the closest Pontic–Caspian steppe source populations. Even my post “Steppe ancestry” step by step from a year ago … Read the rest ““Steppe ancestry” step by step (2019): Mesolithic to Early Bronze Age Eurasia”

Corded Ware and Bell Beaker related groups defined by patrilocality and female exogamy


Two new interesting papers concerning Corded Ware and Bell Beaker peoples appeared last week, supporting yet again what is already well-known since 2015 about West Uralic and North-West Indo-European speakers and their expansion.

Below are relevant excerpts (emphasis mine) and comments.

#UPDATE (27 OCT 2019): I have updated Y-DNA and mtDNA maps of Corded Ware, Bell Beaker, EBA, MBA, and LBA migrations. I have also updated PCA plots, which now include the newly reported samples and those from the Tollense valley, and I have tried some qpAdm models (see below).

I. Corded Ware and

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