Category: Population Genomics

Decline of genetic diversity in ancient domestic stallions in Europe

Open access research article Decline of genetic diversity in ancient domestic stallions in Europe, by Wutke et al., Science (2018), 4(4):eaap9691.

Abstract (emphasis mine):

Present-day domestic horses are immensely diverse in their maternally inherited mitochondrial DNA, yet they show very little variation on their paternally inherited Y chromosome. Although it has recently been shown that Y chromosomal diversity in domestic horses was higher at least until the Iron Age, when and why this diversity disappeared remain controversial questions. We genotyped 16 recently discovered Y chromosomal single-nucleotide polymorphisms in 96 ancient Eurasian stallions spanning the early domestication stages (Copper and

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Latin Americans show widespread Mediterranean and North African ancestry

Recent preprint Latin Americans show wide-spread Converso ancestry and the imprint of local Native ancestry on physical appearance, by Chacon-Duque et al. bioRxiv (2018).

Abstract:

Historical records and genetic analyses indicate that Latin Americans trace their ancestry mainly to the admixture of Native Americans, Europeans and Sub-Saharan Africans. Using novel haplotype-based methods here we infer the sub-populations involved in admixture for over 6,500 Latin Americans and evaluate the impact of sub-continental ancestry on the physical appearance of these individuals. We find that pre-Columbian Native genetic structure is mirrored in Latin Americans and that sources of non-Native ancestry, and admixture

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David Reich on social inequality and Yamna expansion with few Y-DNA subclades

Interesting article from David Reich that I had missed, at Nautilus, Social Inequality Leaves a Genetic Mark.

It explores one of the main issues we are observing with ancient DNA, the greater reduction in Y-DNA lineages relative to mtDNA lineages, and its most likely explanation (which I discussed recently).

Excerpts interesting for the Indo-European question (emphasis mine):

Gimbutas’s reconstruction has been criticized as fantastical by her critics, and any attempt to paint a vivid picture of what a human culture was like before the period of written texts needs to be viewed with caution. Nevertheless, ancient DNA data

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Genetic structure, divergence and admixture of Han Chinese, Japanese and Korean populations

pca-korea-japanese-han

Open access Genetic structure, divergence and admixture of Han Chinese, Japanese and Korean populations, by Wang, Lu, Chung, and Xu, Hereditas (2018) 155:19.

Abstract (emphasis mine):

Background
Han Chinese, Japanese and Korean, the three major ethnic groups of East Asia, share many similarities in appearance, language and culture etc., but their genetic relationships, divergence times and subsequent genetic exchanges have not been well studied.

Results
We conducted a genome-wide study and evaluated the population structure of 182 Han Chinese, 90 Japanese and 100 Korean individuals, together with the data of 630 individuals representing 8 populations wordwide. Our analyses revealed

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Ancient Patagonian genomes suggest origin and diversification of late maritime hunter-gatherers

ancient-patagonia-admixture

Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia, by de la Fuente et al. PNAS (2018) published ahead of print.

Abstract (emphasis mine):

Patagonia was the last region of the Americas reached by humans who entered the continent from Siberia ∼15,000–20,000 y ago. Despite recent genomic approaches to reconstruct the continental evolutionary history, regional characterization of ancient and modern genomes remains understudied. Exploring the genomic diversity within Patagonia is not just a valuable strategy to gain a better understanding of the history and diversification of human populations in the southernmost tip of

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Consequences of O&M 2018 (III): The Balto-Slavic conundrum in Linguistics, Archaeology, and Genetics

This is part of a series of posts analyzing the findings of the recent Nature papers Olalde et al.(2018) and Mathieson et al.(2018) (abbreviated O&M 2018).

The recent publication of Narasimhan et al. (2018) has outdated the draft of this post a bit, and it has made it at the same time still more interesting.

While we wait for the publication of the dataset (and the actual Y-DNA haplogroups and precise subclades with the revision of the paper), and as we watch the wrath of Hindu nationalists vented against the West (as if the steppe was in Western Europe) … Read the rest “Consequences of O&M 2018 (III): The Balto-Slavic conundrum in Linguistics, Archaeology, and Genetics”

Ancient DNA reveals temporal population structure of pre-Incan and Incan periods in South‐Central Andes area

Ancient DNA reveals temporal population structure within the South‐Central Andes area, by Russo et al. Am. J. Phys. Anthropol. (2018).

Abstract (emphasis mine):

Objectives
The main aim of this work was to contribute to the knowledge of pre‐Hispanic genetic variation and population structure among the South‐central Andes Area by studying individuals from Quebrada de Humahuaca, North‐western (NW) Argentina.

Materials and methods
We analyzed 15 autosomal STRs in 19 individuals from several archaeological sites in Quebrada de Humahuaca, belonging to the Regional Developments Period (900–1430 AD). Compiling autosomal, mitochondrial, and Y‐chromosome data, we evaluated population structure and differentiation among eight

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Early Indo-Iranian formed mainly by R1b-Z2103 and R1a-Z93, Corded Ware out of Late PIE-speaking migrations

yamna-expansion-reich

The awaited, open access paper on Asian migrations is out: The Genomic Formation of South and Central Asia, by Narasimhan et al. bioRxiv (2018).

Abstract:

The genetic formation of Central and South Asian populations has been unclear because of an absence of ancient DNA. To address this gap, we generated genome-wide data from 362 ancient individuals, including the first from eastern Iran, Turan (Uzbekistan, Turkmenistan, and Tajikistan), Bronze Age Kazakhstan, and South Asia. Our data reveal a complex set of genetic sources that ultimately combined to form the ancestry of South Asians today. We document a southward spread of

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Proto-Indo-European homeland south of the Caucasus?

User Camulogène Rix at Anthrogenica posted an interesting excerpt of Reich’s new book in a thread on ancient DNA studies in the news (emphasis mine):

Ancient DNA available from this time in Anatolia shows no evidence of steppe ancestry similar to that in the Yamnaya (although the evidence here is circumstantial as no ancient DNA from the Hittites themselves has yet been published). This suggests to me that the most likely location of the population that first spoke an Indo-European language was south of the Caucasus Mountains, perhaps in present-day Iran or Armenia, because ancient DNA from people who

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