The uneasy relationship between Archaeology and Ancient Genomics

News feature Divided by DNA: The uneasy relationship between archaeology and ancient genomics, Two fields in the midst of a technological revolution are struggling to reconcile their views of the past, by Ewen Callaway, Nature (2018) 555:573-576.

Interesting excerpts (emphasis mine):

In duelling 2015 Nature papers⁶^,⁷, the teams arrived at broadly similar conclusions: an influx of herders from the grassland steppes of present-day Russia and Ukraine — linked to Yamnaya cultural artefacts and practices such as pit burial mounds — had replaced much of the gene pool of central and Western Europe around

… Read the rest

Tracking material cultures with ancient DNA: medieval Norse walrus ivory trade, and leather shields from Zanzibar

Two papers have been recently published, offering another interesting use of ancient DNA analysis for Archaeology and, potentially, Linguistics.

Open access Ancient DNA reveals the chronology of walrus ivory trade from Norse Greenland, by Star, Barrett, Gondek, & Boessenkool, bioRxiv (2018).

Abstract (emphasis mine):

The search for walruses as a source of ivory -a popular material for making luxury art objects in medieval Europe- played a key role in the historic Scandinavian expansion throughout the Arctic region. Most notably, the colonization, peak and collapse of the medieval Norse colony of Greenland have all been attributed to the proto-globalization of

… Read the rest

Statistical methods fashionable again in Linguistics: Reconstructing Proto-Australian dialects

Reconstructing remote relationships – Proto-Australian noun class prefixation, by Mark Harvey & Robert Mailhammer, Diachronica (2017) 34(4): 470–515

Abstract:

Evaluation of hypotheses on genetic relationships depends on two factors: database size and criteria on correspondence quality. For hypotheses on remote relationships, databases are often small. Therefore, detailed consideration of criteria on correspondence quality is important. Hypotheses on remote relationships commonly involve greater geographical and temporal ranges. Consequently, we propose that there are two factors which are likely to play a greater role in comparing hypotheses of chance, contact and inheritance for remote relationships: (i) spatial distribution of corresponding forms;

… Read the rest

Paternal lineages mainly from migrants, maternal lineages mainly from local populations in Argentina

New paper (behind paywall) Genetic variation in populations from central Argentina based on mitochondrial and Y chromosome DNA evidence, by García, Pauro, Bailliet, Bravi & Demarchi, J. Hum. Genet (2018) 63: 493–507.

Abstract (emphasis mine):

We present new data and analysis on the genetic variation of contemporary inhabitants of central Argentina, including a total of 812 unrelated individuals from 20 populations. Our goal was to bring new elements for understanding micro-evolutionary and historical processes that generated the genetic diversity of the region, using molecular markers of uniparental inheritance (mitochondrial DNA and Y chromosome). Almost 76% of the individuals show

… Read the rest

Y-DNA haplogroup R1b-Z2103 in Proto-Indo-Iranians?

We already know that the Sintashta -Andronovo migrants will probably be dominated by Y-DNA R1a-Z93 lineages. However, I doubt it will be the only Y-DNA haplogroup found.

I said in my predictions for this year that there could not be much new genetic data to ascertain how Pre-Indo-Iranian survived the invasion, gradual replacement and founder effects that happened in terms of male haplogroups after the arrival of late Corded Ware migrants, and that we should probably have to rely on anthropological explanations for language continuity despite genetic replacement, as in the Basque case.

Nevertheless, since … Read the rest “Y-DNA haplogroup R1b-Z2103 in Proto-Indo-Iranians?”

Basal Eurasians split off ca. 80kya and contributed ca. 10% to EEF

Efficiently inferring the demographic history of many populations with allele count data, by Kamm, Terhorst, Durbin, & Song (2018).

Abstract

The sample frequency spectrum (SFS), or histogram of allele counts, is an important summary statistic in evolutionary biology, and is often used to infer the history of population size changes, migrations, and other demographic events affecting a set of populations. The expected multipopulation SFS under a given demographic model can be efficiently computed when the populations in the model are related by a tree, scaling to hundreds of populations. Admixture, back-migration, and introgression are common natural processes that violate

… Read the rest

Agricultural origins on the Anatolian plateau

New paper (behind paywall) Agricultural origins on the Anatolian plateau, by Baird et al. PNAS (2018), published ahead of print (March 19).

Abstract (emphasis mine):

This paper explores the explanations for, and consequences of, the early appearance of food production outside the Fertile Crescent of Southwest Asia, where it originated in the 10th/9th millennia cal BC. We present evidence that cultivation appeared in Central Anatolia through adoption by indigenous foragers in the mid ninth millennium cal BC, but also demonstrate that uptake was not uniform, and that some communities chose to actively disregard cultivation. Adoption of cultivation

… Read the rest

Differing modes of animal exploitation in North Pontic Eneolithic and Bronze Age Societies

Open access Differing modes of animal exploitation in North-Pontic Eneolithic and Bronze Age Societies, by Mileto, Kaiser, Rassamakin, Whelton & Evershed, STAR (2018). You can download the PDF.

Abstract (emphasis mine)

This paper presents new results of an interdisciplinary investigation of the diet and subsistence strategies of populations living in the North-Pontic region during the Eneolithic and the Early Bronze Age (ca. 3800 BC to the 2500 BC). New organic residue analyses of 200 sherds from five Eneolithic sites and two Early Bronze Age settlements are presented. The molecular and stable isotope results are discussed in relation to

… Read the rest

The time and place of European admixture in Ashkenazi Jewish history

Open access The time and place of European admixture in Ashkenazi Jewish history, by Xue, Lencz, Darvasi, Pe’er, & Carmi, PLOS Genetics (2018).

Abstract (emphasis mine):

The Ashkenazi Jewish (AJ) population is important in genetics due to its high rate of Mendelian disorders. AJ appeared in Europe in the 10th century, and their ancestry is thought to comprise European (EU) and Middle-Eastern (ME) components. However, both the time and place of admixture are subject to debate. Here, we attempt to characterize the AJ admixture history using a careful application of new and existing methods on a large AJ sample.

… Read the rest