Latin Americans show widespread Mediterranean and North African ancestry

Recent preprint Latin Americans show wide-spread Converso ancestry and the imprint of local Native ancestry on physical appearance, by Chacon-Duque et al. bioRxiv (2018).

Abstract:

Historical records and genetic analyses indicate that Latin Americans trace their ancestry mainly to the admixture of Native Americans, Europeans and Sub-Saharan Africans. Using novel haplotype-based methods here we infer the sub-populations involved in admixture for over 6,500 Latin Americans and evaluate the impact of sub-continental ancestry on the physical appearance of these individuals. We find that pre-Columbian Native genetic structure is mirrored in Latin Americans and that sources of non-Native ancestry, and admixture timings, match documented migratory flows. We also detect South/East Mediterranean ancestry across Latin America, probably stemming from the clandestine colonial migration of Christian converts of non-European origin (Conversos). Furthermore, we find that Central Andean ancestry impacts on variation of facial features in Latin Americans, particularly nose morphology, possibly relating to environmental adaptation during the evolution of Native Americans.

latin-america-finestructure
Reference population samples, fineSTRUCTURE groups and SOURCEFIND ancestry estimates for the five Latin American countries examined. (A) Colored pies and grey dots indicate the approximate geographic location of the 117 reference population samples studied. These samples have been subdivided on the world map into five major biogeographic regions: Native Americans (38 populations), Europeans (42 populations), East/South Mediterraneans (15 populations), Sub-Saharan Africans (15 populations) and East Asians (7 populations). The coloring of pies represents the proportion of individuals from that sample included in one of the 35 reference groups defined using fineSTRUCTURE (these groups are listed in the color-coded insets for each region; Supplementary Fig. 2). The grey dots indicate reference populations not inferred to contribute ancestry to the CANDELA sample. Panels (B) and (C) show, respectively, the estimated proportion of sub-continental Native American and European ancestry components in individuals with >5% total Native American or European ancestry in each country sampled (the stacked bars are color-coded as for the reference population groups shown in the insets of panel (A)). Panel (D) shows boxplots of the estimated sub-continental ancestry components for individuals with >5% total Sephardic/East/South Mediterranean ancestry. In this panel colors refer to countries as for the colored country labels shown in (A).

I don’t know how I missed this. It is probably the biggest sample of Latin American populations used for genetic analysis, and it seems it is due for publication soon.

One of its most interesting finds is the eastern Mediterranean and North African ancestry found in almost a quarter of the individuals sampled all over Latin America, which the authors attribute to Sephardic Jews or Conversos.

Although these Conversos were forbidden from migrating to the colonies, historical records document that some individuals made the journey, in an attempt to avoid persecution14. Since this was a clandestine process, the extent of Converso migration to Latin America is poorly documented. Genetic studies have provided suggestive evidence that certain Latin American populations, arguably with a peculiar history, could have substantial Converso ancestry1,18. Our findings indicate that the genetic signature of Converso migration to Latin America is substantially more prevalent than suggested by these special cases, or by historical records.

However, strictly speaking, Converso refers to a recent convert, while this ancestry could have also been part of older Sephardic (and obviously other North African) admixture found in Iberian populations during the Reconquista.

latin-america-native-spanish-conversos
Geographic variation of Native American (A), European (B), and East/South Mediterranean (C) ancestry sub-components in Latin American individuals. Each pie represents an individual with pie location corresponding to birthplace. Since many individuals share birthplace, jittering has been performed based on pie size and how crowded an area is. Pie size is proportional to total continental ancestry and only individuals with >5% of each continental ancestry are shown. Coloring of pies represents the proportion of each sub-continental component estimated for each individual (color-coded as in Fig. 1; Chaco2 does not contribute >5% to any individual and was excluded). Pies in panel (C) have been enlarged to facilitate visualization.

Discovered via Lizzie Wade’s article Latin America’s lost histories revealed in modern DNA, Science (2018).

Related:

Genetic structure, divergence and admixture of Han Chinese, Japanese and Korean populations

pca-korea-japanese-han

Open access Genetic structure, divergence and admixture of Han Chinese, Japanese and Korean populations, by Wang, Lu, Chung, and Xu, Hereditas (2018) 155:19.

Abstract (emphasis mine):

Background
Han Chinese, Japanese and Korean, the three major ethnic groups of East Asia, share many similarities in appearance, language and culture etc., but their genetic relationships, divergence times and subsequent genetic exchanges have not been well studied.

Results
We conducted a genome-wide study and evaluated the population structure of 182 Han Chinese, 90 Japanese and 100 Korean individuals, together with the data of 630 individuals representing 8 populations wordwide. Our analyses revealed that Han Chinese, Japanese and Korean populations have distinct genetic makeup and can be well distinguished based on either the genome wide data or a panel of ancestry informative markers (AIMs). Their genetic structure corresponds well to their geographical distributions, indicating geographical isolation played a critical role in driving population differentiation in East Asia. The most recent common ancestor of the three populations was dated back to 3000 ~ 3600 years ago. Our analyses also revealed substantial admixture within the three populations which occurred subsequent to initial splits, and distinct gene introgression from surrounding populations, of which northern ancestral component is dominant.

Conclusions
These estimations and findings facilitate to understanding population history and mechanism of human genetic diversity in East Asia, and have implications for both evolutionary and medical studies.

pca-phylogenetic-tree-east-asia
Population level phylogenetic Tree and Principal component analysis (PCA). (A) The maximum likelihood tree was constructed based on pair-wise FST matrix. And the marked number are bootstrap value; (B) The top two PCs of individuals representing six East Asian populations, mapped to their corresponding geographic locations (generated by R 2.15.2 and Microsoft Excel 2010)

Interesting excerpts:

It is obvious that the genetic difference among the three East Asian groups initially resulted from population divergence due to pre-historical or historical migrations. Subsequently, different geographical locations where the three populations are located, mainland of China, Korean Peninsular and Japanese archipelago, respectively, apparently facilitated population differentiation due to physical isolation and independent genetic drift. Our estimations of population divergence time among the three groups, 1.2~ 3.6 KYA, are largely consistent with known history of the three populations and those related. However, considering that recent admixture could have reduced genetic difference between populations, it is likely the divergence time was underestimated.

We detected substantial gene flow among the three populations and also from the surrounding populations. For example, based on our analysis with the F3 test, Korean received gene flow from Han Chinese and Japanese, and gene flow also happened between Han Chinese and Japanese (Additional file 12: Table S3). These gene flows are expected to have reduced the genetic differentiation between the three ethnic groups. On the other hand, we also detected considerable gene flow from surrounding populations to the three populations studied. For instance, an ancestral population represented by Ryukyuan have contributed greater to Japanese than to Han Chinese, while southern ethnic group like Dai have contributed more to continent populations than to island and peninsula populations. Contrary to the gene flow among the three populations, these gene flows from surrounding populations are expected to have increased genetic difference among the three populations if they occurred independently and from different source populations. According to our results, the major source of gene flow to the three ethnic groups were substantially different, for example, the major source of gene flow to Han Chinese was from southern ethnic groups, the major source of gene flow to Japanese was from southern islands, and the major source of gene flow to Korean were from both mainland and islands. Therefore, those gene flows might have significantly contributed to further genetic differentiation of the three populations.

The three populations have similar but not identical demographical history; they all experience a strong population expansion in the last 20,000 years. However, according to different geographic distribution, their effective population size and population expansion are different.

Although based on modern populations, the study is interesting in light of the potential implications for a Macro-Altaic proposal.

Related:

Ancient Patagonian genomes suggest origin and diversification of late maritime hunter-gatherers

ancient-patagonia-admixture

Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia, by de la Fuente et al. PNAS (2018) published ahead of print.

Abstract (emphasis mine):

Patagonia was the last region of the Americas reached by humans who entered the continent from Siberia ∼15,000–20,000 y ago. Despite recent genomic approaches to reconstruct the continental evolutionary history, regional characterization of ancient and modern genomes remains understudied. Exploring the genomic diversity within Patagonia is not just a valuable strategy to gain a better understanding of the history and diversification of human populations in the southernmost tip of the Americas, but it would also improve the representation of Native American diversity in global databases of human variation. Here, we present genome data from four modern populations from Central Southern Chile and Patagonia (n = 61) and four ancient maritime individuals from Patagonia (∼1,000 y old). Both the modern and ancient individuals studied in this work have a greater genetic affinity with other modern Native Americans than to any non-American population, showing within South America a clear structure between major geographical regions. Native Patagonian Kawéskar and Yámana showed the highest genetic affinity with the ancient individuals, indicating genetic continuity in the region during the past 1,000 y before present, together with an important agreement between the ethnic affiliation and historical distribution of both groups. Lastly, the ancient maritime individuals were genetically equidistant to a ∼200-y-old terrestrial hunter-gatherer from Tierra del Fuego, which supports a model with an initial separation of a common ancestral group to both maritime populations from a terrestrial population, with a later diversification of the maritime groups.

pca-ancient-south-american
PCA of ancient and present-day South American populations. All of the ancient individuals were projected onto the first two PCs by using the lsq option from smartpca.

Related:

Consequences of O&M 2018 (III): The Balto-Slavic conundrum in Linguistics, Archaeology, and Genetics

This is part of a series of posts analyzing the findings of the recent Nature papers Olalde et al.(2018) and Mathieson et al.(2018) (abbreviated O&M 2018).

The recent publication of Narasimhan et al. (2018) has outdated the draft of this post a bit, and it has made it at the same time still more interesting.

While we wait for the publication of the dataset (and the actual Y-DNA haplogroups and precise subclades with the revision of the paper), and as we watch the wrath of Hindu nationalists vented against the West (as if the steppe was in Western Europe) and science itself, we have already seen confirmation from the Reich Lab of their new approach to Late Proto-Indo-European migrations.

Yamna/Steppe EMBA, previously identified as the direct source of “steppe” ancestry (AKA Yamnaya‘ ancestry) and Late Indo-European migrations in Asia – through Corded Ware, it is to be understood – has been officially changed. In the case of Indo-Iranian migrations it is the “Steppe MLBA cloud”, after a direct contribution to it of Yamna/Steppe EMBA, which expanded Indo-Iranian, as I predicted ancient DNA could support.

In Twitter, the main author responded the following when asked for this change regarding the origin of steppe ancestry in Asian migrants (emphasis mine):

Our reasons are:

  1. The Turan samples show no elevated steppe ancestry till 2000BC.
  2. MLBA is R1a
  3. Indus periphery doesn’t have steppe ancestry but Swat does, and EMBA doesn’t work both in terms of time or genetic ancestry to explain the difference.
yamna-late-proto-indo-european
Image modified from Narasimhan et al. (2018), including the most likely proto-language identification of different groups. Original description “Modeling results including Admixture events, with clines or 2-way mixtures shown in rectangles, and clouds or 3-way mixtures shown in ellipses”. Yes, this map is the latest official view on migrations from the Reich Lab now. See the original full image here.

I am glad to see finally recognized that Y-DNA haplogroups and time have to be taken into account, and happy also to see an end to the by now obsolete ‘ADMIXTURE/PCA-only relevance’ in Human Ancestry. The timing of archaeological migrations, the cultural attribution of each sample, and the role of Y-DNA variability reduction and expansion have been finally recognized as equally important to assess potential migrations, as I requested.

This change was already in the making some months ago, when David Anthony – who has worked with the group for this paper and others before it – already changed his official view on Corded Ware – from his previous support of the 2015 model. His latest theory, which linked Yamna settlements in Hungary with a potential mixed society of migrants (of R1b-L23 and R1a-Z645 lineages) from West Yamna, is most likely wrong, too, but it was clearly a brave step forward in the right direction.

The only reasonable model now is that Yamna expanded Late Proto-Indo-European languages with steppe ancestry + R1b-L23 subclades.

You can either accept this change, or you can deny it and wait until one sample of R1a-Z645 appears in West Yamna or central Europe, or one sample of R1b-L23 appears in Corded Ware (as it is obvious it could happen), to keep spreading the wrong ideas still some more years, while the rest of the world goes on: Mallory, Anthony, and other archaeologists co-authoring the latest paper (probably part of the stronger partnership with academics that we were going to see), who had formally put forward complex, detailed theories, investing their time and name in them, have rejected their previous migration models to develop new ones based on the most recent findings. If they can do that, I am sure any amateur geneticist out there can, too.

yamna-expansion-malopolska
Modified image, from Narasimhan et al. (2018). Anthony’s new model of a Yamna Hungary -> Corded Ware (Małopolska) migration arrow in red. Notice also how they keep the arrow from West Yamna to the north (in black), due probably to the Baltic Late Neolithic samples (see below).

The Balto-Slavic dialect and its homeland

An interesting question in Linguistics and Archaeology, now that Corded Ware cannot be identified as “Indo-Slavonic” or any other imaginary ancient group (like Indo-Slavo-Germanic), remains thus mostly unchanged since before the famous 2015 genetic papers:

  • Was Balto-Slavic a dialect of the expanding North-West Indo-European language, a Northern LPIE dialect, as we support, based on morphological and lexical isoglosses?
  • Or was it part of an Indo-Slavonic group in East Yamna, i.e. a Graeco-Aryan dialect, based mainly on the traditional Satem-Centum phonological division?

I am a strong supporter of Balto-Slavic being a member of a North-West Indo-European group. That’s probably because I educated myself first with the main Spanish books* on Proto-Indo-European reconstruction, and its authors kept repeating this consistent idea, but I have found no relevant data to reject it in the past 15 years.

* Today two of the three volumes are available in English, although they are from the early 1990s, hence a bit outdated. They also maintain certain peculiarities from Adrados’ own personal theories, such as multiple (coloured) laryngeals, 5 cases – with a common ancestral oblique case – for Middle PIE, etc. But it has lots of detailed discussions on the different aspects of the reconstruction. It is not an easy introductory manual to the field, though; for that you have already many famous short handbooks out there, like those of Fortson (N.American), Beekes (Leiden), or Meier-Brügger (Germany).

Fernando and I have always maintained that North-West Indo-European must have formed a very recent community, probably connected well into the early 2nd millennium BC for certain recent isoglosses to spread among its early dialects, based on our guesstimates*, and on our belief that it formed at some point not just a dialect continuum, but probably a common language, so we estimated that the expansion was associated with the pan-European influence of Únětice and close early Bronze Age European contacts.

NOTE. I know, you must be thinking “linguistic guesstimates? Bollocks, that’s not Science”. Right? Wrong. When you learn a dozen languages from different branches, half a dozen ancient ones, and then still study some reconstructed proto-languages from them, you begin to make your own assumptions about how the language changes you perceive could have developed according to your mental time frames. If you just learned a second language and some Latin in school, and try to make assumptions as to how language changes, or you believe you can judge it with this limited background, you have evidently the wrong idea of what a guesstimate is. I accept criticism to this concept from a scientist used only to statistical methods, since it comes from pure ignorance of what it means. And I accept alternative guesstimates from linguists whose language backgrounds may differ (and thus their perception of language change). However, I would not accept a glottochronological or otherwise (supposedly) statistical model instead (or a religious model, for that matter), so we have no alternatives to guesstimates for the moment.

In fact, guesstimates and dialectalization have paved the way to the steppe hypothesis, first with the kurgan hypothesis by Marija Gimbutas, then complemented further in the past 60 years by linguists and archaeologists into a detailed Khvalynsk -> Yamna -> Afanasevo/Bell Beaker/Sintashta-Andronovo expansion model, now confirmed with genomics. So either you trust us (or any other polyglot who deals with Indo-European matters, like Adrados, Lehmann, Beekes, Kloekhorst, Kortlandt, etc.), or you begin learning ancient languages and obtaining your own guesstimates, whichever way you prefer. The easy way of numbers + computer science does not exist yet, and is quite far from happening – until we can understand how our brains summarize and select important details involved in obtaining estimates – , no matter what you might be reading (even in Nature or Science) recently

proto-indo-european-expansion
Proto-Indo-European dialectal expansion according to Adrados (1998).

Data from the 2015 papers changed my understanding of the original NWIE-speaking community, and I have since shifted my preffered anthropological model (from a Northern dialect in Yamna spreading into a loose NWIE-speaking Corded Ware -> Únětice) to a quite close group formed by late Yamna settlers in the Carpathian Basin, expanded as East Bell Beakers, and later continuing with close contacts through Central European EBA.

NOTE. As you can read, we initially rejected Gimbutas’ and Anthony’s (2007) notion of a Late PIE splitting suddenly into all known dialects (viz. Italo-Celtic with Vučedol/Bell Beaker), and looked thus for a common NWIE spread with Corded Ware migrants, with help from inferences of modern haplogroup distribution (as was common in the early 2000s). Language reconstruction was the foundation of that model, and it was right in its own way. It probably gave the wrong idea to geneticists and archaeologists, who quite easily accepted some results from the 2015 papers as supporting this model. But it also helped us develop a new model and predict what would happen in future papers, as demonstrated in O&M 2018. Any alternative linguistic and archaeological model could explain what is seen today in genomics, but our model of North-West Indo-European reconstruction is obviously at present the best fit for it.

calcolithic-expansion
Map of Chalcolithic migrations (A Grammar of Modern Indo-European, 2nd ed. 2008): Corded Ware as the vector of Indo-European languages.

Nevertheless, one of the most important Balticists and Slavicists alive, Frederik Kortlandt, posits that there was in fact an Indo-Slavonic group, so one has to take that possibility into account. Not that his ideas are flawless, of course: he defends the glottalic theory – which is still held today by just a handful of researchers – , and I strongly oppose his description of Balto-Slavic and Germanic oblique cases in *-m- (against other LPIE *-bh-) as an ancestral remnant related to Anatolian (an ending which few scholars would agree correspond to what he claims), since that would probably represent an older split than warranted in our model. I believe genetics is proving that the dialectalization of Late PIE happened as Fernando López-Menchero and I described.

NOTE. The idea with these examples of how he has been wrong in LPIE and MPIE reconstruction is not to observe the common ad hominem arguments used by amateur geneticists to dismiss academic proposals (“he said that and was wrong, ergo he is wrong now”). It is to bring into attention that the argument from authority is important for the academic community insofar as it creates a common ground, i.e. especially when there are many relevant scholars agreeing on the same subject. But, indeed, any model can and should be challenged, and all authorities are capable of being wrong, and in fact they often are.

The most common explanation today for the dialectal development *-m- is an innovation (not an archaism), whether morphological (viz. Ita. and Gk. them. pl *-i) or phonological (as I defend); and the most commonly repeated model for the satemization trend (even for those supporting a three-dorsal theory for PIE) is areal contact, whether driven by a previous (most likely Uralic) substratum, or not. Hence, if Kortlandt’s main different phonological and morphological assessments of the parent language are flawed, and they are the basis for his dialectal scheme, it should be revised.

The ‘atomic bomb’ that Indo-Slavonic proponents launched, in my opinion, was Holzer’s Temematic (born roughly at the same time as the renewed Old European concept in North-West Indo-European model of Oettinger) – and indeed Kortlandt’s acceptance of it. It seems to me like the linguistic equivalent of the archaeological “patron-client relationship” proposed by Anthony for a cultural diffusion of Late PIE into different Corded Ware regions: almost impossible to be fully rejected, if the Indo-Slavonic superstrate is proposed for a relatively early time.

In my opinion, the shared morphological layer with North-West Indo-European is obviously older than Iranian influence on Slavic, and I think this is communis opinio today. But how could we disentangle the dialectalization of Balto-Slavic, if there is (as it seems) an ancestral substrate layer (most likely Uralic) common to both Balto-Slavic and Indo-Iranian? It seems a very difficult task.

bronze_age_early_Unetice.
Diachronic map of migrations in Europe ca. 2250-1750 BC

The expansion of Balto-Slavic

In any case, there are two, and only two mainstream choices right now.

NOTE. Mainstream, as in representing trends current today among Indo-Europeanists, so that many programs around the world would explain these alternative models to their students, or they would easily appear in most handbooks. Not like the word “mainstream” you read in any comment out there by anyone who has never been interested in Indo-European studies, and uses any text from any author, written who knows how long ago, merely to justify their ethnic preconceptions coupled with certain genomic finds.

You can agree with:

A) The Spanish and German schools of thought, together with many American and British scholars, as well as archaeologists like Heyd, Mallory, or Prescott, and now Anthony, too: the language ancestral to Balto-Slavic, Germanic, and Italo-Celtic accompanied expanding West Yamna/East Bell Beakers into Europe, and then their speakers – like the rest of peoples everywhere in Europe – admixed later in the different regions.

B) Frederik Kortlandt and other Indo-Slavicists. The ‘original’ Balto-Slavic would have spread with Srubna (and likely Potapovka before it), as a product of the admixture of East Yamna’s Indo-Slavonic with incoming Corded Ware migrants (this would correspond to my description of Indo-Iranian). ‘True’ Balto-Slavic speakers would have then absorbed the Temematic-speaking migrants (equivalent to early Balto-Slavic migrants as described in the demic diffusion model) spreading from the west, most likely in the steppe. Later developments from the steppe would have then brought Baltic to the north, and Slavic to the west.

Therefore, in both cases the language spoken by early R1a-Z645 lineages in Únětice or Mierzanowice/Nitra EBA cultures would have been an eastern North-West Indo-European dialect associated with expanding Bell Beakers, and closely related to Germanic and Italo-Celtic. In the second case, the ancient samples we see genetically closer to modern West Slavs could thus be identified with those speaking the Temematic substrate absorbed later by Balto-Slavic, or maybe by Balts migrating northward, and Slavs spreading west- and southward.

NOTE. In any case, we know that R1a-Z645 subclades resurged in Central-East Europe after the expansion of Bell Beakers, potentially showing an ancient link with the prevalent R1a subclades in the region today. We know that some ancient Central European populations cluster near modern West Slavs, but in other interesting regions (like the British Isles, Central Europe, Scandinavia, or Iberia) we also see close clusters, and nevertheless observe historically documented radical ethnolinguistic changes, as well as many different subsequent genetic inflows and founder effects, that have significantly altered the anthropological picture in these regions, so it could very well be that the lineages we find in ancient samples do not correspond to modern West Slavic lineages, or even similar ancient and modern lineages could show a radical cultural discontinuity (as is likely the case in this to-and-from-the-steppe migration scheme).

bronze-age-tollense-battle
Diachronic map of migrations in Europe ca. 1250-750 BC.

Since we are going to see signs of both – west and east admixture – in early Slavic communities near the steppe, and the distribution from South, West, and East Slavs will include a wide “cloud” connecting Central, East, and South-East Europe, as it is evident already from early Germanic samples, it may be interesting to shift our attention to the Tollense valley and Lusatian samples, and their predominant Y-DNA haplogroups. Once again, tracking male-driven migrations from Central Europe to the Baltic region and the steppe, and back again to much of Central and South Europe, will determine which groups expanded this eastern NWIE dialect initially and in later times.

Since Baltic and Slavic languages are attested quite late, genetics is likely to help us select among the different available models for Balto-Slavic, although (it is worth repeating it) these lineages may not be the same that later expanded each dialect.

NOTE. Bronze and Iron Age samples might begin to depict the true Balto-Slavic migration map. Apart from the strong differences in the satemization processes seen among Baltic, Slavic, and Indo-Iranian, from an archaeological point of view the geographic location of the earliest attested Baltic languages and the prehistoric developments of the region seem to me almost incompatible with a homeland in the steppe. Anyway, in the worst-case scenario – for those of us who work with Balto-Slavic to reconstruct North-West Indo-European – there is consensus that there must an eastern North-West Indo-European language (which some would call Temematic), whose common traits with Germanic and Italo-Celtic we use to reconstruct their parent language. The question remains thus mostly theoretical, of limited pragmatic use for the reconstruction.

The third way: Baltic Late Neolithic

I have referred to Kristiansen and his group‘s position regarding Corded Ware as Indo-European as flawed before. While their latest interpretation (and language identification) was wrong, Kristiansen’s original idea of long-lasting contacts in the Dnieper-Dniester region with the area occupied by late Trypillia developing a Proto-Corded Ware culture was probably right, as we are seeing now.

New data in Mittnik et al. 2018 show some interesting early Late Neolithic samples from the Baltic region – Zvejnieki, Gyvakarai1 (R1a-Z645) and Plinkaigalis242 – , proving what I predicted: that elevated steppe ancestry and R1a-Z645 subclades would be found in the Dnieper-Dniester region unrelated to the Yamna expansion, and, it seems, to migrants of the Corded Ware A-horizon.

Funnily enough, this shows that there were probably ancient interactions in the region, as originally asserted by Kristiansen, and probably following some of Victor Klochko‘s proposed exchange paths, but earlier than predicted by him.

Nevertheless, linguist Guus Kroonen (from Kristiansen’s workgroup) issued a quick response to O&M 2018 in yet another twist of his agricultural substrate theory, changing Corded Ware from the vector to a vector of expansion of Late Proto-Indo-European languages (thus following again strictly Gimbutas’ oudated model), which fails thus to tackle the main inconsistencies of their previous models, as shown now with the latest paper on South Asian migrations. As I said, they were always one step behind Anthony, and they still are.

Funny also how Anthony, too – like Kristiansen – , may have been right all along since 2007, in proposing that Corded Ware (the nuclear Corded Ware migrants) stemmed from the Dnieper-Dniester region roughly at the same time as Yamna migrants expanded west, and that they did not have any genetic connection with each other.

neolithic_steppe-anatolian-migrations
Most likely Pre-Proto-Anatolian migration with Suvorovo-Novodanilovka chiefs in the North Pontic steppe and the Balkans.

Both researchers, who collaborated with the latest genomic research, remade their models, and have to revise now their most recent proposals with the new data, influencing each new paper published with their pressure to be right in their previous models, and with new genomic data compelling them to change their theories under the pressure not to be too wrong again, in this strange vicious circle. Had they remained silent and committed to their archaeological theories, they could have been right all along, each one in their own way.

NOTE. BTW, in case you see ad hominem here too, I feel compelled to say that only thanks to their commitment to disentangle the truth about ancient migrations, and their readiness to collaborate with genetic research – unlike many others in their field – we know today what we know. If they have been wrong many times, it is because they have tried to connect the genetic dots as they were told. Only because of their readiness to explore their science further they should be praised by all. But, again, that does not mean that they cannot be wrong in their models…

Thanks to Anthony’s latest change of mind, we don’t have to hear the “cultural diffusion” argument anymore, and I consider this a great advance for the field.

NOTE. Not that there could not be prehistoric cultural diffusion events of language (i.e. not accompanied by genetic admixture), of course, but such theories, almost impossible to disprove, probably need much more than a simple “patron-client relationship” proposal and anthropometry to justify them, in a time when we will be able to see almost every meaningful personal exchange in Genomics…

Today – since the finding of Ukraine_Eneolithic sample I6561, of haplogroup R1a-Z93, dated ca. 4200 BC, and likely from the Sredni Stog culture – it seems more likely than ever that the expansion of R1a-Z645 subclades was in fact associated with the spread of steppe admixture probably near the North Pontic forest-steppe region, most likely from the Dnieper-Dniester or Upper Dniester region.

The appearance of a ‘late’ Z93 subclade already at such an early date, with steppe admixture, makes it still more likely that the Proto-Corded Ware culture, from where Corded Ware migrants of R1a-Z645 lineages later spread, was probably associated with this wide region.

In a parallel but unrelated migration, as it is now clear, steppe admixture also expanded with Yamna settlers of R1b-L23 lineages into the North Pontic steppe – from the North Caspian steppe, where it had developed previously as the Khvalynsk and (likely) Repin cultures -, roughly at the same time as Proto-Corded Ware expanded to the north, ca. 3300-3000 BC, and then expanded to the west into the Balkans (contributing to the formation of Balkan EBA cultures, and to the East Bell Beaker group).

NOTE. A migration of Yamna settlers northward along the Prut dated ca. 3000 BC or later could have justified the appearance of steppe admixture in the Dnieper-Dniester region, as I proposed for the Zvejnieki sample, although dates from Baltic samples are likely too early for that. For this to be corroborated, migrants should be accompanied up to a certain region by R1b-L23 lineages, and this could mean in turn a revival of Anthony’s original model of cultural diffusion of 2007. The most likely scenario, however, as predicted by Heyd, given the early appearance of steppe admixture and R1a-Z93 subclades in the forest-steppe during the 5th millennium, is that the admixture happened much earlier than that, fully unrelated to Late PIE migrations.

indo-european-yamna-corded-ware
Diachronic map of Copper Age migrations in Europe ca. 3100-2600 BC

The modern Baltic and Slavic conundrum

As for some people of Northern European ancestry previously supporting a bulletproof Yamna (R1a/R1b) -> Corded Ware migration that was obviously wrong; now supporting different Sredni Stog -> Corded Ware groups representing Indo-Slavonic (and Germanic??) in a model that is clearly wrong: how are these attempts different from Western Europeans supporting the autochthonous continuity of R1b-P312 lineages against all recent data, from Indians supporting the autochthonous continuity of R1a-M417 lineages no matter what, and from the more recent trend of autochthonous continuity theories for N1c lineages and Uralic in Eastern Europe?

Modern Germanic-speaking peoples can trace their common language to Nordic Iron Age Proto-Germanic, Celts to La Tène’s expansion of Proto-Celtic, and Romance speakers to the Roman expansion (and to an earlier Proto-Italic), all three dating approximately to the Iron Age. Proto-Slavic is dated much later than that, and probably Proto-Baltic too (or maybe earlier depending on the dialectal proposal), with Balto-Slavic being possibly coeval with Pre-Proto-Germanic and Italo-Celtic, but probably slightly later than that. Also, the language ancestral to Slavic may be (like a theoretical Proto-Romance language) impossible to reconstruct with precision, due to multiple substrate (or superstrate?) influences on the forming and expanding Proto-Slavic communities from different steppe peoples.

We know that proto-historic Germanic, Celtic, and Italic peoples spread from relatively small regions, and had almost nothing to do with historic groups speaking their daughter languages, let alone modern speakers. Baltic and Slavic are not different.

NOTE. We have read that Weltzin samples clustered closely to Central Europeans (especially Austrians), and at a certain distance from modern Poles. That’s the conclusion of Sell’s PhD thesis, and it may be right, if you take only modern samples for comparison. However, if you have read or thought that they represented some kind of “ancestral Germanic vs. Slavic” battle, please imagine Trump’s voice for my opinion: Wrroonng, wrroonng, wrroonng. They cluster closely with Bell Beaker migrants, Poland BA, and Únětice (in this order), which we now know thanks to the data from O&M 2018 and Mittnik et al. 2018. And we also know who they don’t cluster close too: Corded Ware and Trzciniec samples. Therefore, people from the region near the most likely homelands of Pre-Proto-Germanic and Proto-Balto-Slavic are – as expected – likely descendants from Bell Beaker migrants in Central Europe. The genetic relationship of those ancient samples to modern inhabitants of Central-East Europe? Not obvious – at all.

tollense-welzin
PCA of samples from Tollense Valley battlefield and some ancient and modern samples.

We also know (and have known for a long time, well before these recent papers) that the oldest attested Indo-European languagesMycenaean, early Anatolian languages, and Indo-Aryan (through certain words in Mitanni inscriptions) – do not show continuity from the places where they were first attested to the Late and Middle Proto-Indo-European (steppe) homeland either. There should be no problem then in accepting that there is no linguistic, archaeological, or common sense reason to support that Balto-Slavic is older or shows more regional continuity than other IE languages from Europe.

NOTE. Oh yes, Balts saying “Baltic is the most similar language to PIE” I hear you thinking? Uh-huh, sure. And according to some Greeks (supported e.g. by the conclusions from Lazaridis et al. 2017) Mycenaeans were ‘autochthonous’, and Proto-Greek the most similar to PIE. For many Hindus, Vedic Sanskrit is in fact PIE), and the latest paper by Narasimhan et al. (2018) only reinforces this idea (don’t ask me why). Also, Caucasian scholar Gamkrelidze (with Ivanov) supported the origin of the language precisely in the Caucasus, with Armenian being thus the purest language. For Italians fans of Virgil and the Roman Empire, Latin (like Aeneas) comes from Anatolian linguistically and genetically, hence it must be the ‘oldest’ IE dialect alive… No, wait, Danish scholars Kroonen and Iversen quite recently asserted that Germanic is the oldest to branch off, then it should thus be nearest to PIE! I think you can see a pattern here…And don’t forget about the new Vasconic-Uralic hypotheses going on now, with Vasconic fans of R1b changing from Palaeolithic to Mesolithic, and now to European Neolithic and whatnot, or Uralic fans of N1c changing now from Mesolithic EHG to Siberia (for ancestry) or Central Asia (for N1c subclades), or whatever is necessary to believe in ‘continuity’ of their people following the newest genetic papers… Just pick whatever theory you want, call it “mainstream”, and that’s it.

So, if there is no reliable archaeological model connecting Bronze or Iron Age cultures to Eastern European cultures which are supposed to represent the Proto-Slavic and Proto-Baltic homelands…why on earth would any reasonable amateur (not to speak about scholars) dare propose any sort of genetic or linguistic continuity for thousands of years from PIE to early Slavs, a people whose first blurry appearance in historical records happened during the Middle Ages in rather turbulent and genetically admixed regions? It does not make any sense, and it had all odds against it. Blond hair, blue eyes, lactase persistence? Sure, and ABO group, brachycephaly, anthropometry… All very scientifish.

antiquity_classical_Europe_przeworsk
Diachronic map of migrations during Classical Antiquity in Europe 250 BC – 250 AD.
Where’s Proto-Slavic Wally?

Wrap-up

Human ancestry can only help refine solid academic theories, it cannot create one. Every new pet theory used to satisfy modern cultural pre- and misconceptions has failed, and it will fail again, and again, and again…

To have an own anthropological model of prehistoric migration requires time and study. It is not enough to play with software and to misuse traditional academic disciplines just to ‘prove’ some completely irrelevant, meaningless, and false continuity.

Related:

Ancient DNA reveals temporal population structure of pre-Incan and Incan periods in South‐Central Andes area

Ancient DNA reveals temporal population structure within the South‐Central Andes area, by Russo et al. Am. J. Phys. Anthropol. (2018).

Abstract (emphasis mine):

Objectives
The main aim of this work was to contribute to the knowledge of pre‐Hispanic genetic variation and population structure among the South‐central Andes Area by studying individuals from Quebrada de Humahuaca, North‐western (NW) Argentina.

Materials and methods
We analyzed 15 autosomal STRs in 19 individuals from several archaeological sites in Quebrada de Humahuaca, belonging to the Regional Developments Period (900–1430 AD). Compiling autosomal, mitochondrial, and Y‐chromosome data, we evaluated population structure and differentiation among eight South‐central Andean groups from the current territories of NW Argentina and Peru.

andes-populations
Location of the archaeological sites analyzed in this study (stars) and the South-central Andean populations used for comparisons (triangles). The punctuated line indicates the north-south subdivision of Quebrada de Humahuaca.1: Pe~nas Blancas, 2: San José, 3: Huacalera, 4: Banda de Perchel, 5: Juella, 6: Sarahuaico, 7: Tilcara, 8: Muyuna, 9: Los Amarillos, 10: Las Pirguas, 11: Tompullo 2, 12: Puca, 13: Acchaymarca, 14: Lauricocha. Map constructed from the obtained with the R package ggmap (Kahle & Wickham, 2013)

Results
Autosomal data revealed a structuring of the analyzed populations into two clusters which seemed to represent different temporalities in the Andean pre‐Hispanic history: pre‐Inca and Inca. All pre‐Inca samples fell into the same cluster despite being from the two different territories of NW Argentina and Peru. Also, they were systematically differentiated from the Peruvian Inca group. These results were mostly confirmed by mitochondrial and Y‐chromosome analyses. We mainly found a clearly different haplotype composition between clusters.

Discussion
Population structure in South America has been mostly studied on current native groups, mainly showing a west‐to‐east differentiation between the Andean and lowland regions. Here we demonstrated that genetic population differentiation preceded the European contact and might have been more complex than thought, being found within the South‐central Andes Area. Moreover, divergence among temporally different populations might be reflecting socio‐political changes occurred in the evermore complex pre‐Hispanic Andean societies.

pcoa-andes
Principal coordinates analysis (PCoA) based on individual genetic distances obtained with autosomal STRs data. Percentage of variance explained by each coordinate is shown in parenthesis. Colors were assigned according to the two clusters discovered with structure

See also:

Early Indo-Iranian formed mainly by R1b-Z2103 and R1a-Z93, Corded Ware out of Late PIE-speaking migrations

yamna-expansion-reich

The awaited, open access paper on Asian migrations is out: The Genomic Formation of South and Central Asia, by Narasimhan et al. bioRxiv (2018).

Abstract:

The genetic formation of Central and South Asian populations has been unclear because of an absence of ancient DNA. To address this gap, we generated genome-wide data from 362 ancient individuals, including the first from eastern Iran, Turan (Uzbekistan, Turkmenistan, and Tajikistan), Bronze Age Kazakhstan, and South Asia. Our data reveal a complex set of genetic sources that ultimately combined to form the ancestry of South Asians today. We document a southward spread of genetic ancestry from the Eurasian Steppe, correlating with the archaeologically known expansion of pastoralist sites from the Steppe to Turan in the Middle Bronze Age (2300-1500 BCE). These Steppe communities mixed genetically with peoples of the Bactria Margiana Archaeological Complex (BMAC) whom they encountered in Turan (primarily descendants of earlier agriculturalists of Iran), but there is no evidence that the main BMAC population contributed genetically to later South Asians. Instead, Steppe communities integrated farther south throughout the 2nd millennium BCE, and we show that they mixed with a more southern population that we document at multiple sites as outlier individuals exhibiting a distinctive mixture of ancestry related to Iranian agriculturalists and South Asian hunter-gathers. We call this group Indus Periphery because they were found at sites in cultural contact with the Indus Valley Civilization (IVC) and along its northern fringe, and also because they were genetically similar to post-IVC groups in the Swat Valley of Pakistan. By co-analyzing ancient DNA and genomic data from diverse present-day South Asians, we show that Indus Periphery-related people are the single most important source of ancestry in South Asia — consistent with the idea that the Indus Periphery individuals are providing us with the first direct look at the ancestry of peoples of the IVC — and we develop a model for the formation of present-day South Asians in terms of the temporally and geographically proximate sources of Indus Periphery-related, Steppe, and local South Asian hunter-gatherer-related ancestry. Our results show how ancestry from the Steppe genetically linked Europe and South Asia in the Bronze Age, and identifies the populations that almost certainly were responsible for spreading Indo-European languages across much of Eurasia.

NOTE. The supplementary material seems to be full of errors right now, because it lists as R1b-M269 (and further subclades) samples that have been previously expressly said were xM269, so we will have to wait to see if there are big surprises here. So, for example, samples from Mal’ta (M269), Iron Gates (M269 and L51), and Latvia Mesolithic (L51), a Deriivka sample from 5230 BC (M269), Armenia_EBA (Z2103)…Also, the sample from Yuzhnyy Oleni Ostrov is R1a-M417 now.

EDIT (1 APR 2018): The main author has confirmed on Twitter that they have used a new Y Chr caller that calls haplogroups given the data provided, and depending on the coverage tried to provide a call to the lowest branch of the tree possible, so there are obviously a lot of mistakes – not just in the subclades of R. A revision of the paper is on its way, and soon more people will be able to work with the actual samples, since they say they are releasing them.

Nevertheless, since it is subclades (and not haplogroups) the apparent source of gross errors, for the moment it seems we can say with a great degree of confidence that:

  • New samples of East Yamna / Poltavka are of haplogroup R1b-L23.
  • Afanasevo is confirmed to be dominated by R1b-M269.
  • Sintashta, as I predicted could happen, shows a mixed R1b-L23/ R1a-Z645 society, compatible with my model of continuity of Proto-Indo-Iranian in the East Yamna admixture with late Corded Ware immigrants.

With lesser confidence in precise subclades, we find that:

  • A sample from Hajji Firuz in Iran ca. 5650 BC, of subclade R1b-Z2103, may confirm Mesolithic R1b-M269 lineages from the Caucasus as the source of CHG ancestry to Khvalynsk/Yamna, and be thus the reason why Reich wrote about a potential PIE homeland south of the Caucasus . (EDIT 11 APR 2018) The sample shows steppe ancestry, therefore the date is most likely incorrect, and a new radiocarbon dating is due. It is still interesting – depending on the precise subclade – for its potential relationship with IE migrations into the area.
  • New samples of East Yamna / Poltavka are of haplogroup R1b-Z2103.
  • Afanasevo migrants are mainly of haplogroup R1b-Z2103.
    • The Darra-e Kur sample, ca. 2655, of haplogroup R1b-L151, without a clear cultural adscription, may be the expected sign of Afanasevo migrants (Pre-Proto-Tocharian speakers) expanding a Northern Indo-European (in contrast with a Southern or Graeco-Aryan) dialect, in a region closely linked with the later desert mummies in the Tarim Basin. Its early presence there would speak in favour of a migration through the Inner Asian Mountain Corridor previous to the one caused by Andronovo migrants.
  • Sintashta shows a mixed R1b-Z2103 / R1a-Z93 society.
    • Later Indo-Iranian migrations are apparently dominated by R1a-Z2123, an early subclade of R1a-Z93, also found in Srubna.
    • R1b is also seen later in BMAC (ca. 1487 BC), although its subclade is not given.
  • There is also a sample of R1a-Z283 subclade in the eastern steppe (ca. 1600 BC). What may be interesting about it is that it could mark one of the subclades not responsible for the expansion of Balto-Slavic (or responsible for it with the expansion of Srubna, for those who support an Indo-Slavonic branch related Sintashta-Potapovka).
  • A sample of R1b-U106 subclade is found in Loebanr_IA ca. 950 BC, which – together with the sample of Darra-e Kur – is compatible with the presence of L51 in Yamna.

NOTE. Errors in haplogroups of previously published samples make every subclade of new samples from the supplementary table questionable, but all new samples (safe for the Darra_i_Kur one) were analysed and probably reported by the Reich Lab, and at least upper subclades in each haplogroup tree seem mostly coherent with what was expected. Also, the contribution of Iranian Farmer related (a population in turn contributing to Hajji Firuz) to Khvalynsk in their sketch of the genetic history may be a sign of the association of R1b-M269 lineages with CHG ancestry, although previous data on precise R1b subclades in the region contradict this. (EDIT 11 APR 2018) The sample of Hajji Firuz is most likely much younger than the published date, hence its younger subclade may be correct. No revision or comment on this matter has been published, though.

yamna-steppe-emba-mlba-cloud
Modeling results. (A) Admixture events originating from 7 “Distal” populations leading 538 to the formation of the modern Indian cloud shown geographically. Clines or 2-way mixtures of 539 ancestry are shown in rectangles, and clouds (3-way mixtures) are shown in ellipses.

Also, it seems that the Corded Ware culture appears now irrelevant for Late Proto-Indo-European migrations. Observe:

In the text, a consistent terminology of Yamnaya or Yamnaya-related Steppe pastoralists, discarding the relevance of previous migrations from the North Pontic steppe in spreading Late Indo-European:

Our results also shed light on the question of the origins of the subset of Indo-European languages spoken in India and Europe (45). It is striking that the great majority of Indo-European speakers today living in both Europe and South Asia harbor large fractions of ancestry related to Yamnaya Steppe pastoralists (corresponding genetically to the Steppe_EMBA cluster), suggesting that “Late Proto-Indo-European”—the language ancestral to all modern Indo- European languages—was the language of the Yamnaya (46). While ancient DNA studies have documented westward movements of peoples from the Steppe that plausibly spread this ancestry to Europe (5, 31), there has not been ancient DNA evidence of the chain 488 of transmission to South Asia. Our documentation of a large-scale genetic pressure from Steppe_MLBA groups in the 2nd millennium BCE provides a prime candidate, a finding that is consistent with archaeological evidence of connections between material culture in the Kazakh middle-to-late Bronze Age Steppe and early Vedic culture in India (46).

EDIT (1 APR 2018): I corrected this text and the word ‘official’ in the title, because more than rejecting the role of Corded Ware migrants in expanding Late PIE, they actually seem to keep considering Corded Ware migrants as continuing the western Yamna expansion in the Carpathian Basin, so no big ‘official’ change or retraction in this paper, just subtle movements out of their previous model.

yamna-migrations-indo-iranian
Modeling results.(B) A 540 schematic model of events originating from 7 “Distal” populations leading to the formation of 541 the modern Indian cline, shown chronologically. (C) Admixture proportions as estimated 542 using qpAdm for populations reflected in A and B.

NOTE. If they correct the haplogroups soon, I will update the information in this post. Unless there is a big surprise that merits a new one, of course.

EDIT (1 APR 2018): Multiple minor edits to the original post.

EDIT (2 APR 2018): While I and other simple-minded people were only looking to confirm our previous theories using Y-DNA haplogroups, and are content with wildly speculating over the consequences if some of those strange (probably wrong) ones were true, intelligent people are using their time for something useful, interpreting the results of the investigation as described in the paper, to offer a clearer picture of Indo-Iranian migrations for everyone:

Visit the beautiful interactive map with samples: with their location, PCA, ADMIXTURE and haplogroups (still with those originally given): https://public.tableau.com/profile/vagheesh#!/vizhome/TheGenomicFormationofSouthandCentralAsia/Fig_1

Featured image, from the article: “A Tale of Two Subcontinents. The prehistory of South Asia and Europe are parallel in both being impacted by two successive spreads, the first from the Near East after 7000 BCE bringing agriculturalists who mixed with local hunter-gatherers, and the second from the Steppe after 3000 BCE bringing people who spoke Indo-European languages and who mixed with those they encountered during their migratory movement. Mixtures of these mixed populations then produced the rough clines of ancestry present in both South Asia and in Europe today (albeit with more variable proportions of local hunter-gatherer-related ancestry in Europe than in India), which are (imperfectly) correlated to geography. The plot shows in contour lines the time of the expansion of Near Eastern agriculture. Human movements and mixtures, which also plausibly contributed to the spread of languages, are shown with arrows.”

Related:

Proto-Indo-European homeland south of the Caucasus?

User Camulogène Rix at Anthrogenica posted an interesting excerpt of Reich’s new book in a thread on ancient DNA studies in the news (emphasis mine):

Ancient DNA available from this time in Anatolia shows no evidence of steppe ancestry similar to that in the Yamnaya (although the evidence here is circumstantial as no ancient DNA from the Hittites themselves has yet been published). This suggests to me that the most likely location of the population that first spoke an Indo-European language was south of the Caucasus Mountains, perhaps in present-day Iran or Armenia, because ancient DNA from people who lived there matches what we would expect for a source population both for the Yamnaya and for ancient Anatolians. If this scenario is right the population sent one branch up into the steppe-mixing with steppe hunter-gatherers in a one-to-one ratio to become the Yamnaya as described earlier- and another to Anatolia to found the ancestors of people there who spoke languages such as Hittite.

The thread has since logically become a trolling hell, and it seems not to be working right for hours now.

Reich’s proposal based on ancestral components to explain the formation of a people and language is a continuation of their emphasis on ancestry to explain cultures and languages. It seems quite interesting to see this happen again, given their current trend to surreptitiously modify their previous ‘Yamnaya ancestry’ concept and Yamnaya millennia-long R1a-R1b community (that supposedly explains a Yamna -> Corded Ware -> Bell Beaker migration) to a more general ‘steppe people’ sharing a ‘steppe ancestry’ who spoke a ‘steppe language’.

steppe-ancestry
Interesting arrows of dispersal of steppe ancestry, from Yamna -> Corded Ware -> Bell Beaker, from David Reich’s new book (yes, from 2018, number one bestseller in Amazon.com).

This new idea based on ancestral components suffers thus from the same essential methodological problems, which equate it – yet again – to pure speculation:

  1. It is a conclusion based on the genomic analysis of few individuals from distant regions and different periods, and – maybe more disturbingly – on the lack of steppe ancestry in the few samples at hand.
  2. Wait, what? Steppe ancestry? So they are trying to derive potential genetic connections among specific prehistoric cultures with a poorly depicted genetic sketch, based on previous flawed concepts (instead of on anthropological disciplines), which seems a rather long stretch for any scientist, whether they are content with seeing themselves as barbaric scientific conquerors of academic disciplines or not. In other words, statistics is also science (in fact, the main one to assert anything in almost any scientific field), and you cannot overcome essential errors (design, sampling, hypothesis testing) merely by using a priori correct statistical methods. Results obtained this way constitute a statistical fallacy.

  3. Even if the sampling and hypothesis testing were fine, to derive anthropological models from genomic investigation is completely wrong. Ancestral component ≠ population.
  4. To include not only potential migrations, but also languages spoken by these potential migrants? It’s sad that we have a need to repeat it, but if ancestral component ≠ population, how could ancestral component = language?

The Proto-Indo-European-speaking community

This is what we know about the formation of a Proto-Indo-European community (i.e. a community speaking a reconstructible Proto-Indo-European language) in the Pontic-Caspian steppe, which is based on linguistic reconstruction and guesstimates, tracing archaeological cultures backwards from cultures known to have spoken ancient (proto-)languages, and helping both disciplines with anthropological models (for which ancient genomics is only helping select certain details) of migration or – rarely – cultural diffusion:

NOTE. The following dates are obviously simplified. Read here a more detailed linguistic assessment based on phonology.

neolithic_steppe-anatolian-migrations
Most likely Pre-Proto-Anatolian migration with Suvorovo-Novodanilovka chiefs in the North Pontic steppe and the Balkans.
  • ca. 5000 BC. Early Proto-Indo-European (or Indo-Uralic) spoken probably during the formation and development of a loose Early Khvalynsk – Sredni Stog I cultural-historical community over the Pontic-Caspian steppe region, whose indigenous population probably had mainly Caucasus hunter-gatherer ancestry.
  • ca. 4500 BC. Khvalynsk probably speaking Middle Proto-Indo-European expands, most likely including Suvorovo-Novodanilovka chiefs into the North Pontic steppe, and probably expanding R1b-M269 lineages for the first time.
  • ca. 4000 BC. Separated communities develop, including North Pontic cultures probably gradually dominated by R1a-Z645 (potentially speaking Proto-Uralic); and Khvalynsk (and Repin) cultures probably dominated by R1b-L23 lineages, most likely developing a Late Proto-Indo-European already separated from Proto-Anatolian.
  • ca. 3500 BC. A Proto-Corded Ware population dominated by R1a-Z645 expands to the north, and slightly later an early Yamna community develops from Late Khvalynsk and Repin, expanding to the west of the Don River, and to the east into Afanasevo. This is most likely the period of reduction of variability and expansion of subclades of R1a-Z645 and R1b-L23 that we expect to see with more samples.
  • ca. 3000 BC. Expansion of Corded Ware migrants in northern Europe, and Yamna migrants along the Danube and into the Balkans, with further reduction and expansion of certain subclades.
  • ca. 2500 BC. Expansion of Bell Beaker migrants dominated by R1b-L51 subclades in Europe, and late Corded Ware migrants in east Yamna expanding R1a-Z93 subclades.

All these events are compatible with language reconstruction in mainstream European schools since at least the 1980s, supported by traditional archaeological research of the past 20 years, and is being confirmed with Genomics.

For those willingly lost in a myriad of new dreams boosted by the shallow comment contained in David Reich’s paragraph on CHG ancestry, even he does not doubt that the origin of Late Proto-Indo-European lies in Yamna, to the north of the Caucasus, based on Anthony’s (2007) account:

yamnaya-migrations-reich
Both images from the book, posted by Twitter user Jasper at https://twitter.com/jaspergregory.

NOTE: By the way, David Anthony, one of the main sources of information for Reich’s group, never considered Corded Ware to have received Yamna migrants, and althought he changed his model due to the conclusions of the 2015 papers, he has recently changed his model again to adapt it to the inconsistencies found in phylogeography.

CHG ancestry and PIE homeland south of the Caucasus

As for the potential origins of CHG ancestry in early Proto-Indo-European speakers, I already stated clearly my opinion quite recently. They may be attributed to:

Just to be clear, an expansion of Proto-Anatolian to the south, through the Caucasus, cannot be discarded today. It will remain a possibility until Maykop and more Balkan Chalcolithic and Anatolian-speaking samples are published.

However, an original Early Proto-Indo-European community south of the Caucasus seems to me highly unlikely, based on anthropological data, which should drive any conclusion. From what I could read, here are the rather simplistic arguments used:

  • Gimbutas and Maykop: Maykop was thought to be (in Gimbutas’ times) a rather late archaeological culture, directly connected to a Transcaucasian Copper Age culture ca. 2400-2300 BC. It has been demonstrated in recent years that this culture is substantially older, and even then language guesstimates for a Late PIE / Proto-Anatolian would not fit a migration to the north. While our ignorance may certainly be used to derive far-fetched conclusions about potential migrations from and to it, using Gimbutas (or any archaeological theory until the 1990s) today does not make any sense. Still less if we think that she favoured a steppe homeland.

NOTE. It seems that the Reich Lab may have already access to Maykop samples, so this suggested Proto-Indo-European – Maykop connection may have some real foundation. Regardless, we already know that intense contacts happened, so there will be no surprise (unless Y-DNA shows some sort of direct continuity from one to the other).

  • Gamkrelidze & Ivanov: they argued for an Armenian homeland (and are thus at the origin of yet another autochthonous continuity theory), but they did so to support their glottalic theory, i.e. merely to support what they saw as favouring their linguistic model (with Armenian being the most archaic dialect). The glottalic theory is supported today – as far as I know – mainly by Kortlandt, Jagodziński, or (Nostraticist) Bomhard, but even they most likely would not need to argue for an Armenian homeland. In fact, their support of a Graeco-Aryan group (also supported by Gamkrelidze & Ivanov) would be against this, at least in archaeological terms.
  • Colin Renfrew and the Anatolian homeland: This conceptual umbrella of language spreading with farming everywhere has changed so much and so many times in the past 20 years, with so many glottochronological and archaeological estimates circulating, that you can support anything by now using them. Mostly used today for abstract models of long-lasting language contacts, cultural diffusion, and constellation analogies. Anyway, he strives to keep up-to-date information to revise the model, that much is certain:
  • Glottochronology, phylogenetic trees, Swadesh list analysis, statistical estimates, psychics, pyramid power, and healing crystals: no, please, no.
Science Magazine
“A first line of evidence comes from linguistic analysis based on quantitative lexical data, which returned a tree compatible with the Anatolian hypothesis

In principle, unlike many other recent autochthonous continuity theories, I doubt there can be much racial-based opposition anywhere in the world to an origin of Proto-Indo-European in the Middle East, where the oldest civilizations appeared – apart, obviously, from modern Northeast and Northwest Caucasian, Kartvelian, or Semitic speakers, who may in turn have to revisit their autochthonous continuity theories radically…

Nevertheless, it is obvious that prehistoric (and many historic) migrations are signalled by the reduction in variability and expansion of certain Y-DNA haplogroups, and not just by ancestral components. That is generally accepted, although the reasons for this almost universal phenomenon are not always clear.

In fact, Proto-Anatolian and Common Anatolian speakers need not share any ancestral component, PCA cluster, or any other statistical parameter related to steppe populations, not even the same Y-DNA haplogroups, given that approximately three thousand years might have passed between their split from an Indo-Hittite community and the first attested Anatolian-speaking communities…We must carefully follow their tracks from Anatolia ca. 1500 BC to the steppe ca. 4500 BC, otherwise we risk creating another mess like the Corded Ware one.

In my opinion, the substantial contribution of EHG ancestry and R1a-M417 lineages to the Pontic-Caspian steppe (probably ca. 6500 BC) from Central or East Eurasia is the most recent sizeable genomic event in the region, and thus the best candidate for the community that expanded a language ancestral to Proto-Indo-European – whether you call it Pre-Proto-Indo-European, Pre-Indo-Uralic, or Eurasiatic, depending on your preferences.

An early (and substantial) contribution of CHG ancestry in Khvalynsk relative to North Pontic cultures, if it is found with new samples, may actually be a further proof of the Caucasian substrate of Proto-Indo-European proposed by Kortlandt (or Bomhard) as contributing to the differentiation of Middle PIE from Uralic. Genomics could thus help support, again, traditional disciplines in accepting or rejecting academic controversial theories.

Conclusion

In the case of an Early PIE (or Indo-Uralic) homeland, genomic data is scarce. But all traditional anthropological disciplines point to the Pontic-Caspian steppe, so we should stick to it, regardless of the informal suggestion written by a renown geneticist in one paragraph of a book conceived as an introduction to the field.

It seems we are not learning much from the hundreds of peer-reviewed, statistically (superficially, at least) sound genetic papers whose anthropological conclusions have been proven wrong by now. A lot of people should be spending their time learning about the complex, endless methods at hand in this kind of research – not just bioinformatics – , instead of fruitlessly speculating about wild unsubstantiated proposals.

As a final note, I would like to remind some in the discussion, who seem to dismiss the identification of CHG with Proto-Indo-European by supporting a “R1a-R1b” community for PIE, of their previous commitment to ancestral components in identifying peoples and languages, and thus their support to Reich’s (and his group’s) fundamental premises.

You cannot have it both ways. At least David Reich is being consistent.

Related:

The uneasy relationship between Archaeology and Ancient Genomics

Allentoft Corded Ware

News feature Divided by DNA: The uneasy relationship between archaeology and ancient genomics, Two fields in the midst of a technological revolution are struggling to reconcile their views of the past, by Ewen Callaway, Nature (2018) 555:573-576.

Interesting excerpts (emphasis mine):

In duelling 2015 Nature papers6,7the teams arrived at broadly similar conclusions: an influx of herders from the grassland steppes of present-day Russia and Ukraine — linked to Yamnaya cultural artefacts and practices such as pit burial mounds — had replaced much of the gene pool of central and Western Europe around 4,500–5,000 years ago. This was coincident with the disappearance of Neolithic pottery, burial styles and other cultural expressions and the emergence of Corded Ware cultural artefacts, which are distributed throughout northern and central Europe. “These results were a shock to the archaeological community,” Kristiansen says.

(…)

Still, not everyone was satisfied. In an essay8 titled ‘Kossinna’s Smile’, archaeologist Volker Heyd at the University of Bristol, UK, disagreed, not with the conclusion that people moved west from the steppe, but with how their genetic signatures were conflated with complex cultural expressions. Corded Ware and Yamnaya burials are more different than they are similar, and there is evidence of cultural exchange, at least, between the Russian steppe and regions west that predate Yamnaya culture, he says. None of these facts negates the conclusions of the genetics papers, but they underscore the insufficiency of the articles in addressing the questions that archaeologists are interested in, he argued. “While I have no doubt they are basically right, it is the complexity of the past that is not reflected,” Heyd wrote, before issuing a call to arms. “Instead of letting geneticists determine the agenda and set the message, we should teach them about complexity in past human actions.”

Many archaeologists are also trying to understand and engage with the inconvenient findings from genetics. (…)
[Carlin:] “I would characterize a lot of these papers as ‘map and describe’. They’re looking at the movement of genetic signatures, but in terms of how or why that’s happening, those things aren’t being explored,” says Carlin, who is no longer disturbed by the disconnect. “I am increasingly reconciling myself to the view that archaeology and ancient DNA are telling different stories.” The changes in cultural and social practices that he studies might coincide with the population shifts that Reich and his team are uncovering, but they don’t necessarily have to. And such biological insights will never fully explain the human experiences captured in the archaeological record.

Reich agrees that his field is in a “map-making phase”, and that genetics is only sketching out the rough contours of the past. Sweeping conclusions, such as those put forth in the 2015 steppe migration papers, will give way to regionally focused studies with more subtlety.

This is already starting to happen. Although the Bell Beaker study found a profound shift in the genetic make-up of Britain, it rejected the notion that the cultural phenomenon was associated with a single population. In Iberia, individuals buried with Bell Beaker goods were closely related to earlier local populations and shared little ancestry with Beaker-associated individuals from northern Europe (who were related to steppe groups such as the Yamnaya). The pots did the moving, not the people.

This final paragraph apparently sums up a view that Reich has of this field, since he repeats it:

Reich concedes that his field hasn’t always handled the past with the nuance or accuracy that archaeologists and historians would like. But he hopes they will eventually be swayed by the insights his field can bring. “We’re barbarians coming late to the study of the human past,” Reich says. “But it’s dangerous to ignore barbarians.”

I would say that the true barbarians didn’t have a habit or possibility to learn from the higher civilizations they attacked or invaded. Geneticists, on the other hand, only have to do what they expect archaeologists to do: study.

EDIT (30 MAR 2018): A new interesting editorial of Nature, On the use and abuse of ancient DNA.

See also:

Statistical methods fashionable again in Linguistics: Reconstructing Proto-Australian dialects

Reconstructing remote relationships – Proto-Australian noun class prefixation, by Mark Harvey & Robert Mailhammer, Diachronica (2017) 34(4): 470–515

Abstract:

Evaluation of hypotheses on genetic relationships depends on two factors: database size and criteria on correspondence quality. For hypotheses on remote relationships, databases are often small. Therefore, detailed consideration of criteria on correspondence quality is important. Hypotheses on remote relationships commonly involve greater geographical and temporal ranges. Consequently, we propose that there are two factors which are likely to play a greater role in comparing hypotheses of chance, contact and inheritance for remote relationships: (i) spatial distribution of corresponding forms; and (ii) language specific unpredictability in related paradigms. Concentrated spatial distributions disfavour hypotheses of chance, and discontinuous distributions disfavour contact hypotheses, whereas hypotheses of inheritance may accommodate both. Higher levels of language-specific unpredictability favour remote over recent transmission. We consider a remote relationship hypothesis, the Proto-Australian hypothesis. We take noun class prefixation as a test dataset for evaluating this hypothesis against these two criteria, and we show that inheritance is favoured over chance and contact.

I was redirected to this work by my wife – who discovered it reading BBC News – , suspicious of its potential glottochronological content. However, I must say – speaking from my absolute ignorance of the main language family investigated – , that it seemed in general an interesting read, with some thorough discussion and attention to detail.

The statistical analyses, however, seem to disrupt the content, and – in my opinion – do not help support its conclusions.

non-pama-nyungan-languages
Map of Non-Pama-Nyungan languages.

Computer Science and Linguistics

We are evidently on alert to tackle dubious research, because of the revival of pseudoscientific methods in linguistic investigation, promoted (yet again) by Nature.

It seems that journals with the highest impact factor, in their search for groundbreaking conclusions supported by any methods involving numbers, are setting a still lower level of standards for academic disciplines.

NOTE. If you think about it – if glottochronology has survived the disgrace it fell into in the 2000s, to come back again now to the top of the publishing industry… How can we expect the “Yamnaya ancestry” concept to be overcome? I guess we will still see certain Eastern Europeans in 2030 arguing for elevated steppe ancestry here and there to support the conclusions of the 2015 papers, no matter what…

I am sure that worse times lie ahead for traditional comparative grammar. For example, it seems that there will be more publications on Proto-Indo-European using novel computer methods: a group led by Janhunen and Pyysalo, from the Department of Languages at the University of Helsinki, promises – under an ever-growing bubble of mistery (or so it seems from their Twitter and Facebook accounts) – a machine-implemented reconstruction (with the generative etymological PIE lexicon project) that will once and for all solve all our previous ‘inconsistencies’…

Spoiler alert for their publications: whether they select to go on mainly with computer-implemented methods, or they use them to support more traditional results, their conclusions will confirm (surprise!) their authors’ previous reactionary theses, such as a renewed support for the traditional monolaryngealism, and a rejection of Kortlandt’s or Kloekhorst’s (i.e. the Leiden School’s) theories on Proto-Indo-European phonology, and thus a PIE relationship to Proto-Uralic, probably stressing yet again an independent origin for both proto-languages.

See also:

Y-DNA haplogroup R1b-Z2103 in Proto-Indo-Iranians?

chalcolithic_early-asia

We already know that the Sintashta -> Andronovo migrants will probably be dominated by Y-DNA R1a-Z93 lineages. However, I doubt it will be the only Y-DNA haplogroup found.

I said in my predictions for this year that there could not be much new genetic data to ascertain how Pre-Indo-Iranian survived the invasion, gradual replacement and founder effects that happened in terms of male haplogroups after the arrival of late Corded Ware migrants, and that we should probably have to rely on anthropological explanations for language continuity despite genetic replacement, as in the Basque case.

Nevertheless, since we have very few samples, I think we could still see a clear genetic contribution from Yamna to Corded Ware immigrants in the North Caspian region (from Abashevo, in turn a mix of Fatyanovo/Balanovo and Catacomb/Poltavka cultures) in terms of:

  • Ancestral components and PCA in new Sintashta-Petrovka, Andronovo, and/or later samples – similar the ‘steppe’ drift seen in Potapovka relative to Sintashta samples, both formed by incoming Corded Ware migrants – ; and
  • R1b-L23 subclades, either appearing scattered during the Sintashta melting pot (of Abashevo/R1a-Z645 and East Yamna-Poltavka/R1b-Z2103 peoples), or resurging after this period, as we have seen in Pre-Balto-Slavic territory.

This contribution could better explain the obvious language continuity in the region, beautifully complementing the complex anthropological model we have now of archaeological continuity of Sintashta and Potapovka with the previous Poltavka, seen in a similar material and symbolic culture that survived the arrival of newcomers.

A lot of people seem to be looking like crazy since O&M 2018 for some sort of connection between Corded Ware and Yamna migrants in Eastern and Central Europe (wheter in SNP calls of samples published, or among almost forgotten academic papers), either to support the ideas of the 2015 papers – for those who relied on their conclusions and built (even if only mentally) far-fetched migration models around it – , or just because of some sort of absurd continuity theory involving modern R1a-Z645 subclades:

NOTE. The situation we have seen with the hundreds of samples from O&M 2018, and with the recent additional Eastern European samples, depict an unexpected absolutely clear-cut distinction in Y-DNA haplogroups between Corded Ware and Yamna/Bell Beaker: I really can’t see how the situation could be more obvious for everyone, so I doubt any further samples will make certain people change their minds. Their hope is, I guess, that just one sample may give some more oxygen to infinite pet theories, as we are still surprisingly seeing even with reactionary R1b autochthonous continuists in Western Europe…

However, looking into the most likely future for the field, what we should be expecting right now is continuity of Yamna ancestry and lineages in early Proto-Indo-Iranian territory. Since we only have a few samples from Sintashta-Petrovka, Potapovka, and Andronovo, I think there might be a sizeable number of R1b-Z2103 subclades in the territory inhabited by those who – no doubt – spread the language into Central Asia.

Haplogroup_R1b_(Y-DNA)
Modern Y-DNA haplogroup R1b distribution, by Maulucioni at Wikipedia

While full population replacement by R1a-Z93 lineages in the North Caspian region ca. 2000 BC is not impossible, I don’t think it is very likely, since we already know that there are R1b-Z2103 lineages widely distributed in Indo-Iranian-speaking territory, and Z93 is now known to be an older subclade than YFull’s mean formation date suggested (due to the Ukraine_Eneolithic I6561 sample‘s SNP call), so what we can infer now that actually happened in Sintashta -> Andronovo is not exactly the spread of haplogroup Z93 during its formation, but rather a regional reduction in its variability coupled with the expansion of some of its subclades.

The main question, after the South Asia paper is finally published, will then be:

  1. Given that Yamna peoples were an elite group of patrilineally-related families mainly of R1b-L23 subclades:
  2. Accepting that PCA, ADMIXTURE, and other statistical methods are not relevant (alone) for ethnolinguistic identification: e.g. Yamna ‘outliers’ and East Bell Beaker migrants of R1b-L23 lineages without steppe ancestry; N1c1a1a-L392 lineages and Siberian ancestry unrelated to Uralic speakers; R1a-Z645 and steppe ancestry in North-East Europe related to Uralic-speaking cultures
  3. If we find now, as I expect, genetic continuity of east Yamna in Sintashta -> Andronovo (relative to other late Corded Ware peoples), probably including haplogroup R1b-Z2103 mixed with R1a-Z93 before its further reduction of subclades (e.g. to L657) and expansion during its subsequent spread southward…

bronze_age_early_Asia-andronovo
Diachronic map of migrations in Asia ca. 2250-1750 BC

Why exactly do we need Corded Ware to explain migrations of Late Indo-European speakers?

In other words: if we had the data we have today in 2015, would we have a need for Corded Ware to explain Indo-European migrations from the steppe? Are some people so blinded by their will to (appear to) be right in their past interpretations that they can’t just let go?

NOTE. On a side note, wouldn’t it be nice for this paper to publish some other R1b-L23 (x2103) sample – maybe even R1b-L51 – in Yamna, Andronovo, or Afanasevo territory, to end both autochthonous continuity theories (of North-Eastern and Western Europe) at the same time?

I really hope someone in David Reich’s team understands this matter, or else they will still identify Corded Ware as the (now probably ‘a’ instead) vector of expansion of Indo-European languages, and some of us will still have fun for another 2 or 3 years with such conclusions, until someone in the lab realizes that ancestry ≠ population ≠ ethnic identification ≠ language.

NOTE. It seems rather dull to read how people are discussing in the Twitterverse conventional constructs like ‘human race‘ as found in Reich’s op-ed in The New York Times, as if such grandiose semantic discussions had any practical meaning, when basic anthropological questions actually relevant for Genomics, like the essential ancestral component ≠ people tenet seem not to be of interest for anyone in the field….

Since our Indo-European demic difusion model (and its consequences for our reconstruction of North-West Indo-European) and this blog are becoming more and more popular each day – judging by the constant growth in visits in the past 6 months or so – , I guess the simplemindedness and predictability of certain geneticists is benefitting traditional anthropology directly, driving more and more amateur geneticists to look for sound academic models to answer the growing inconsistencies of genetic research.

NOTE. I am not saying the rejection of Corded Ware as spreading Indo-European is definitive. Maybe more samples within some years will depict a clear ancient expansion of Early or Middle Proto-Indo-Europeans from Khvalynsk to the forest-steppe and forest zone, and later with certain Corded Ware migrants into Central Europe, over whose territory a Late Indo-European dialect from Bell Beakers became the superstrate, as some have proposed in the past – e.g. to explain Krahe’s Old European hydronymy. I really doubt you could demonstrate such an old ethnolinguistic identification with a clear, unbroken archaeological trail, though, and we know now that this old hydronymy is probably of Late Indo-European nature (possibly even more recent).

What I am saying is: with the data we have now, it does not make any sense to keep the anthropological models invented by geneticists ex nihilo in 2015, and the hundred different alternative Late Indo-European migration models that arebornwitheachnewpaper.

These Yamna -> Corded Ware migration models didn’t have any sense for me since early 2016, but now after O&M 2017, and especially O&M 2018, I don’t think any geneticist with a little knowledge in Linguistics or Archaeology (if they are decent about their quest for truth in describing ancient European migrations) would buy them, if not for some sort of created ‘tradition’. So let’s ditch Corded Ware as Late Indo-European-speaking, let’s accept that late Corded Ware migrants should most likely be identified as early Uralic speakers, and then future data will tell if we are – again – wrong.

Please, don’t let Genomics become another pseudoscience based solely on Bioinformatics like glottochronology: let anthropologists (preferably mainstream archaeologists, but also the true Indo-Europeanists, linguists) help you interpret your raw data. Don’t deceive yourselves thinking that you have read enough about the Indo-European question, or that you know enough Indo-Europeanists (say what?) to derive your own conclusions.

Use the South Asia paper to begin expressly retracting the Corded Ware mess.

Please pretty please with sugar on top?

Related:

For commenters: this post concerns an anthropological question, and deals with the expansion of Late Proto-Indo-European speakers from Yamna, and the controversy surrounding the role of Corded Ware migrants that a handful of academics propose spread from it, based on a renewed model of Gimbutas’ outdated Kurgan theory and on the so-called ‘Yamnaya’ ancestry.

It happens so that the discussion has turned lately mainly to ancient Y-DNA haplogroups, because they help confirm previous mainstream anthropological models of cultural diffusion and migration. It is obviously not reasonable to judge prehistoric ethnolinguistic migrations from ca. 5,000 years ago based on historical nation-states and ethnic or religious concepts invented since the Middle Ages, coupled with “your” people’s main modern (or your own) paternal lineage.

EDIT (27 MAR 2018): Minor corrections and post made shorter.