Shared ancestry of ancient Eurasian hepatitis B virus diversity linked to Bronze Age steppe

Ancient hepatitis B viruses from the Bronze Age to the Medieval period, by Mühlemann et al., Science (2018) 557:418–423.

NOTE. You can read the PDF at Dalia Pokutta’s Academia.edu account.

Abstract (emphasis):

Hepatitis B virus (HBV) is a major cause of human hepatitis. There is considerable uncertainty about the timescale of its evolution and its association with humans. Here we present 12 full or partial ancient HBV genomes that are between approximately 0.8 and 4.5 thousand years old. The ancient sequences group either within or in a sister relationship with extant human or other ape HBV clades. Generally,

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Oldest bubonic plague genome decoded in Srubna ca. 3800 YBP

New open access paper from the Max Planck Institute: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague, by Spyrou et al., Nature Communications (2018) 9:2234.

Interesting excerpts from the paper and supplementary materials (emphasis mine):

Here, we analyse material from the Mikhailovsky II burial site, which was excavated in 2015 and is one of numerous kurgan cemeteries identified in the Samara Oblast. It consists of seven kurgan burials, and is chronologically associated to the ‘Pokrovka’ phase (3,900-3,750 BP) of the ‘Srubnaya’ culture (3,850-3,150 BP) (radiocarbon dates produced in this study provided in Supplementary Table

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On Latin, Turkic, and Celtic – likely stories of mixed societies and little genetic impact

Recent article on The Conversation, The Roman dead: new techniques are revealing just how diverse Roman Britain was, about the paper (behind paywall) A Novel Investigation into Migrant and Local Health-Statuses in the Past: A Case Study from Roman Britain, by Redfern et al. Bioarchaeology International (2018), among others.

Interesting excerpts about Roman London:

We have discovered, for example, that one middle-aged woman from the southern Mediterranean has black African ancestry. She was buried in Southwark with pottery from Kent and a fourth century local coin – her burial expresses British connections, reflecting how people’s communities and lives

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Steppe and Caucasus Eneolithic: the new keystones of the EHG-CHG-ANE ancestry in steppe groups

Some interesting excerpts from Wang et al. (2018):

An interesting observation is that steppe zone individuals directly north of the Caucasus (Eneolithic Samara and Eneolithic steppe) had initially not received any gene flow from Anatolian farmers. Instead, the ancestry profile in Eneolithic steppe individuals shows an even mixture of EHG and CHG ancestry, which argues for an effective cultural and genetic border between the contemporaneous Eneolithic populations in the North Caucasus, notably Steppe and Caucasus. Due to the temporal limitations of our dataset, we currently cannot determine whether this ancestry is stemming from an existing natural genetic

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The new Scicomm’s warhorse is “CHG ancestry = PIE” and the Iranian homeland

Funny reports are popping up due to a recent article in New Scientist (behind paywall), World’s most-spoken languages may have arisen in ancient Iran, which echoes the controversial interpretations of Wang et al. (2018).

I have been waiting to read the printed edition, but that of May 26^th doesn’t have the article in it, so it may be a web-only text.

Nevertheless, here are some excerpts about the PIE homeland from a news aggregator that caught my attention (emphasis mine):

The two proposed locations are divided by the Caucasus mountains, which are found between the Black

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Genetic history of admixture across inner Eurasia; Botai shows R1b-M73

Open access Characterizing the genetic history of admixture across inner Eurasia, by Jeong et al. (2018).

Abstract (emphasis mine):

The indigenous populations of inner Eurasia, a huge geographic region covering the central Eurasian steppe and the northern Eurasian taiga and tundra, harbor tremendous diversity in their genes, cultures and languages. In this study, we report novel genome-wide data for 763 individuals from Armenia, Georgia, Kazakhstan, Moldova, Mongolia, Russia, Tajikistan, Ukraine, and Uzbekistan. We furthermore report genome-wide data of two Eneolithic individuals (~5,400 years before present) associated with the Botai culture in northern Kazakhstan. We find that inner Eurasian populations

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Earliest evidence for equid riding in the ancient Near East is a donkey from the Early Bronze Age

Open access Earliest evidence for equid bit wear in the ancient Near East: The “ass” from Early Bronze Age Tell eṣ-Ṣâfi/Gath, Israel, by Greenfield et al. PLOS One

Abstract:

Analysis of a sacrificed and interred domestic donkey from an Early Bronze Age (EB) IIIB (c. 2800–2600 BCE) domestic residential neighborhood at Tell eṣ-Ṣâfi/Gath, Israel, indicate the presence of bit wear on the Lower Premolar 2 (LPM2). This is the earliest evidence for the use of a bit among early domestic equids, and in particular donkeys, in the Near East. The mesial enamel surfaces on both the right and left

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Consequences of Damgaard et al. 2018 (I): EHG ancestry in Maykop samples, and the potential Anatolian expansion routes

This is part I of two posts on the most recent data concerning the earliest known Indo-European migrations.

Anatolian in Armi

I am reading in forums about “Kroonen’s proposal” of Anatolian in the 3rd millennium. That is false. The Copenhagen group (in particular the authors of the linguistic supplement, Kroonen, Barjamovic, and Peyrot) are merely referencing Archi (2011. “In Search of Armi”. Journal of Cuneiform Studies 63: 5–34) in turn using transcriptions from Bonechi (1990. “Aleppo in età arcaica; a proposito di un’opera recente”. Studi Epigrafici e Linguistici sul Vicino Oriente Antico 7: 15–37.), who asserted the potential Anatolian … Read the rest “Consequences of Damgaard et al. 2018 (I): EHG ancestry in Maykop samples, and the potential Anatolian expansion routes”

No large-scale steppe migration into Anatolia; early Yamna migrations and MLBA brought LPIE dialects in Asia

Another, simultaneous paper with the Eurasian samples from Nature, The first horse herders and the impact of early Bronze Age steppe expansions into Asia, by de Barros Damgaard et al., Science (2018).

A lot of interesting data, I will try to analyse its main implications, if only superficially, in sections.

Anatolian samples

Anatolia_EBA from Ovaören, and Anatolia_MLBA (this including Assyrian and Old Hittite samples), all from Kalehöyük, show almost no change in Y-DNA lineages (three samples J2a, one G2a), and therefore an origin of these people in common with CHG and Iranian Neolithic populations is likely. No EHG ancestry … Read the rest “No large-scale steppe migration into Anatolia; early Yamna migrations and MLBA brought LPIE dialects in Asia”