The Reich Lab has recently pre-published high quality shotgun sequencing data from 216 ancient individuals within the framework of the Allen Ancient Genome Diversity Project / John Templeton Ancient DNA Atlas. Metadata for the 216 genomes are available here.
Their median coverage is 4.9x, and among them there are 50 high coverage genomes (17-36x), but there are also samples with a coverage similar to the previously published ones.
The FamilyTreeDNA Haplotree team formed by phylogeneticist Michael Sager and Göran Runfeldt from the R&D team has analyzed all 129 males for Y-SNP calls, using – and updating with them – … Read the rest “Y-DNA of 129 high quality shotgun ancient samples”
Recent paper First encounters in the north: cultural diversity and gene flow in Early Mesolithic Scandinavia, by Manninen et al. Antiquity (2021).
The authors criticize the model laid out in Günther et al. (2018), whereby the origin of the previously defined Mesolithic Scandinavian hunter-gatherer genetic group (SHG) was defined as an admixture between genetically defined WHG and EHG populations that migrated into Scandinavia from two separate Ice Age refugia: the south (WHG) and north (EHG). This dualistic model was further associated with two specific lithic blade technologies present in Early Mesolithic Scandinavia (Sørensen et al. 2013), as summarized … Read the rest “The importance of archaeology before population genomics”
This is an update to the data from Human population dynamics and Yersinia pestis in ancient northeast Asia, by Kılınç et al. Science Advances (2021).
Files have been released, and some of them are huge, so it might take me some time to analyze them all and include specific subclades in the Ancient DNA Dataset.
For the moment, the sample I highlighted in the previous post, kra001 (2336-2135 calBCE), mtDNA C4b1, from burial Nº1 of Nefteprovod-2, is of very good quality, and it would not be surprising if it made its way to YFull’s tree. It can be … Read the rest “Earliest (and basal) haplogroup N-L1026, from East Siberia”
New paper (behind paywall) Paleolithic to Bronze Age Siberians Reveal Connections with First Americans and across Eurasia, by Yu et al. Cell (2020)
Interesting excerpts (emphasis mine, paragraphs subdivided for clarity):
Population Structure (PCA)
Most of the Lake Baikal individuals occupied the space on a “ANE-NEA” cline running between “Northeast Asian” (NEA) ancestry represented by Neolithic hunter-gathers from the Devil’s Gate in the Russian Far East (Sikora et al., 2019, Siska et al., 2017), and the ANE ancestry represented by Upper Paleolithic Siberian individuals MA1, AfontovaGora 2 (AG2), and AfontovaGora 3 (AG3) (Fu et al., 2016, Raghavan et al.,
… Read the rest “Afanasievo ancestry reached Lake Baikal; Nganasan ancestry origins still at large”
Another preprint came out at the same time as Wang et al. (2020), from the Jena Lab of the Max Planck Society: A dynamic 6,000-year genetic history of Eurasia’s Eastern Steppe, by Jeong, Warinner, et al. bioRxiv (2020).
NOTE. I have now updated the Ancient DNA Dataset, the Prehistory Atlas – with PDF and GIS files including Y-DNA and mtDNA of all newly reported samples (starting with the Neolithic) – as well as the PCA files with those from Wang et al. (2020).
The conclusions are similar, but with some interesting twists. Relevant excerpts (emphasis mine), … Read the rest “R1b-rich Proto-Indo-Europeans show genetic continuity in Asia”
The latest papers from Ning et al. Cell (2019) and Anthony JIES (2019) have offered some interesting new data, supporting once more what could be inferred since 2015, and what was evident in population genomics since 2017: that Proto-Indo-Europeans expanded under R1b bottlenecks, and that the so-called “Steppe ancestry” referred to two different components, one – Yamnaya or Steppe_EMBA ancestry – expanding with Proto-Indo-Europeans, and the other one – Corded Ware or Steppe_MLBA ancestry – expanding with Uralic speakers.
The following maps are based on formal stats published in the papers and supplementary materials from 2015 until today, mainly on … Read the rest “Yamnaya ancestry: mapping the Proto-Indo-European expansions”
Recently, a paper described Eastern Scythian groups as “Uralic-Altaic” just because of the appearance of haplogroup N in two Pazyryk samples.
This simplistic identification is contested by the varied haplogroups found in early Altaic groups, by the early link of Cimmerians with the expansion of hg. N and Q, by the link of N1c-L392 in north-eastern Europe with Palaeo-Laplandic, and now (paradoxically) by the clear link between early Mongolic expansion and N1c-L392 subclades.
A new paper (behind paywall) offers insight into the prevalent presence of R1a-Z93 among eastern Scytho-Siberian groups (most likely including Samoyedic speakers in … Read the rest “Scytho-Siberians of Aldy-Bel and Sagly, of haplogroup R1a-Z93, Q1b-L54, and N”
New paper (behind paywall) Paternal origin of Paleo-Indians in Siberia: insights from Y-chromosome sequences by Wei et al., Eur. J. Hum. Genet. (2018)
Interesting excerpts (for Eurasian migrations):
Differentiation and diffusion in Palaeolithic Siberia
Based on the phylogenetic analyses and the current distributions of relative sub-lineages, we propose that the prehistoric population differentiation in Siberia after the LGM (post-LGM) provided the genetic basis for the emergence of the Paleo-Indian, American aborigine, population. According to the phylogenetic tree of Y-chromosome haplogroup C2-M217 (Fig. 2 and Figure S1), eight sub-lineages emerged in a short period between 15.3 kya and 14.3 kya
… Read the rest “Updated phylogenetic tree of haplogroup Q-M242 points to Palaeolithic expansions”