Fully Steppe-like Proto-Corded Ware Late Trypillians

The genotypes from Human auditory ossicles as an alternative optimal source of ancient DNA, by Sirak et al. Genome Res. (2020), have been finally published by the Reich Lab, so we can get a sneak peek into what’s coming in future papers about the origins of R1a-rich Proto-Corded Ware and R1b-rich Italo-Venetic peoples.

NOTE. To avoid adding potential errors, I have merged the Reich Lab’s Curated Dataset (v. 42.4, March 1 2020) with these new samples before performing the qpAdm analyses. If you find something different with your files, you should probably check out this simple setting first. … Read the rest “Fully Steppe-like Proto-Corded Ware Late Trypillians”

Proto-Anatolians: from the Southern Caucasus or the Balkans?

There has been some renewed interest lately in the origin of Proto-Anatolians, because of the recent lecture by Petra Goedegebuure, associate professor of Hittitology at the University of Chicago: Anatolians on the Move: From Kurgans to Kanesh, given at the Oriental Institute (Feb 5 2020).

I will try to comment on her lecture with a critical view of some of her ideas, keeping in mind reasons for one or the other potential routes, which we can for the moment simplify as Gimbutas’ (1965, 1993) eastern route through the Caucasus vs. Anthony’s (2007, 2015) … Read the rest “Proto-Anatolians: from the Southern Caucasus or the Balkans?”

Italo-Venetic peoples related patrilineally to Terramare elites

Another interesting finding from Human auditory ossicles as an alternative optimal source of ancient DNA, by Sirak et al. (2020):

A sample classified as Italy Middle Bronze Age from Olmo di Nogara (ca. 1400-1200 BC), who is R1b-L51 (xP311, xL52, xL151), CTS6889+ (T->C, 1 read). See YFull’s corresponding R-S1161.

SNP inference for I18130(9309_Oss) / I18131(9309_Co)

This sample probably belongs to individual 309 (35-45 yo), and the female sampled to 323 (30-40 yo), both referenced as from the following study:

Canci A, Contursi D, Fornaciari G. 2005. La necropoli dell’età del bronzo di Olmo di Nogara (Verona): primi risultati

… Read the rest

Earliest R1a-Z93…from Late Trypillia in the Podolian-Volhynian Upland!

Recently, the preprint by Sirak et al. biorXiv (2019), Human auditory ossicles as an alternative optimal source of ancient DNA, was published in Genome Res. (2020), and the corresponding samples were finally uploaded to ENA.

I have been trying to get my hands on sample GLAV_14, a male from the Late Eneolithic site Glăvăneştii Vechi, classified as Romania Bronze Age (ca. 3500-3000 BC), mtDNA T1a1, referenced as investigated first in the study:

Haas N, Maximilian K. 1958. Anthropological study of the human bones from graves with ochre from Glăvăneștii Vechi, Corlăteni and Stoicani Cetățuie. Soviet Anthropology 4,

… Read the rest

Ancient phylogeography: spread of haplogroups R1b, R1a and N

The previous post showed the potential use of TreeToM to visualize ancient DNA samples in maps together with their Y-DNA phylogenetic trees. I have written Newick trees for Y-chromosome haplogroups R1b-L388 (encompassing R-V1636 and R-P297, which in turn split into R-M73 and R-M269), R1a, and N.

I have reviewed some of the BAM files from my previous bulk analyses with YLeaf v.2, to add information that I had not previously included in the All Ancient DNA Dataset, and which might be relevant to the proper depiction of phylogenetic trees; in particular, positive and negative SNPs potentially distinguishing archaic… Read the rest “Ancient phylogeography: spread of haplogroups R1b, R1a and N”

Visualizing phylogenetic trees of ancient DNA in a map

Yesterday the Eaton Lab at Columbia University announced on Twitter a nifty little tool by Carlos Alonso Maya-Lastra called TreeToM, which accepts Newick trees and CSV latitude/longitude data to explore phylogeny and geography interactively, with no coding required.

I thought it could complement nicely my All Ancient DNA Dataset, particularly for those newly described SNPs (FTDNA private variants, etc.) that have not been incorporated yet into SNP Tracker.

Here are two examples with snippets to copy&paste to the appropriate boxes in TreeToM. Feel free to add others in the comments:… Read the rest “Visualizing phylogenetic trees of ancient DNA in a map”

Spread of Indo-European and Uralic speakers in ADMIXTURE

The following are updated files for unsupervised ADMIXTURE of most available ancient Eurasian samples with K=7. For reference, see PCA of ancient and modern Eurasian samples.

NOTE. For a precise interpretation of ancestry evolution, be sure to first check the posts on the expansion of “Steppe ancestry”, on the spread of Yamnaya ancestry with Indo-Europeans, and on the evolution of Corded Ware ancestry typical of modern Uralic populations.

ADMIXTURE timeline

This is a YouTube video similar to the one on Indo-Europeans and Y-DNA evolution:

Some comments

I have tried running supervised ADMIXTURE models by selecting

… Read the rest

The expansion of Indo-Europeans in Y-chromosome haplogroups

I have compiled for two years now the reported Y-DNA and mtDNA haplogroups of ancient DNA samples published, including also SNPs from analysis of the BAM files by hobbyists.

Y-DNA timeline

Here is a video with a timeline of the evolution of Indo-European speakers, according to what is known today about reconstructed languages, prehistoric cultures and ancient DNA:

NOTE. The video is best viewed in HD 1080p (1920×1080) with a display that allows for this or greater video quality, and a screen big enough to see haplogroup symbols, i.e. tablet or greater. The YouTube link is here. The … Read the rest “The expansion of Indo-Europeans in Y-chromosome haplogroups”

R1b-L23-rich Bell Beaker-derived Italic peoples from the West vs. Etruscans from the East

New paper (behind paywall) Ancient Rome: A genetic crossroads of Europe and the Mediterranean, by Antonio et al. Science (2019).

The paper offers a lot of interesting data concerning the Roman Empire and more recent periods, but I will focus on Italic and Etruscan origins.

NOTE. I have updated prehistoric maps with Y-DNA and mtDNA data, and also the PCA of ancient Eurasian samples by period including the recently published samples, now with added sample names to find them easily by searching the PDFs.

Apennine homeland problem

The traditional question of Italic vs. Etruscan origins from a cultural-historical … Read the rest “R1b-L23-rich Bell Beaker-derived Italic peoples from the West vs. Etruscans from the East”