Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula

Open access preprint (which I announced already) at bioRxiv Patterns of genetic differentiation and the footprints of historical migrations in the Iberian Peninsula, by Bycroft et al. (2018).

Abstract (emphasis mine):

Genetic differences within or between human populations (population structure) has been studied using a variety of approaches over many years. Recently there has been an increasing focus on studying genetic differentiation at fine geographic scales, such as within countries. Identifying such structure allows the study of recent population history, and identifies the potential for confounding in association studies, particularly when testing rare, often recently arisen variants. The Iberian

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Consequences of O&M 2018 (II): The unsolved nature of Suvorovo-Novodanilovka chiefs, and the route of Proto-Anatolian expansion

This is part of a series of posts analyzing the findings of the recent Nature papers Olalde et al.(2018) and Mathieson et al.(2018) (abbreviated O&M 2018).

I already expressed my predictions for 2018. One of the most interesting questions among them is the identification of the early Anatolian offshoot, and this is – I believe – where Genomics has the most to say in Indo-European migrations.

Linguistics and Archaeology had already a mainstream account from Late PIE/Yamna onwards, and it has been proven right in Genomic investigation. There is, however, no consensus on Indo-Hittite.

Suvorovo-Novodanilovka

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North Pontic steppe Eneolithic cultures, and an alternative Indo-Slavonic model

I am not a fan of continuity theories – that much should be clear for anyone reading this blog. However, most of such proposals’ supremacist (or rather fear-of-inferiority) overtones don’t mean they have to be wrong. It just means that most of them, most of the time, most likely are.

While reading Tommenable’s comments, I thought about a potential alternative model, where one could a priori accept an identification of North Pontic cultures as ‘Indo-Slavonic’, which seems to be the Eastern European R1a continuist trend right now.

NOTE. To accept this model, one should first (… Read the rest “North Pontic steppe Eneolithic cultures, and an alternative Indo-Slavonic model”

Population substructure in Iberia, highest in the north-west territory (to appear in Nature)

A manuscript co-authored by Angel Carracedo, from the University of Santiago de Compostela, and (always according to him) pre-accepted in Nature, will offer more insight into the population substructure of Spain, based on autosomal DNA.

Carracedo’s lecture about DNA (in Galician), including his summary of the paper (from december 2017):

Some of the points made in the video:

The study shows a situation parallelling – as expected – the expansion of Spanish Medieval kingdoms during the Reconquista (and subsequent repopulation).
In it, the biggest surprise seems to be the greater substructure found in Galicia, the north-western Spanish

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Y-DNA relevant in the postgenomic era, mtDNA study of Iron Age Italic population, and reconstructing the genetic history of Italians

Open Access Annals of Human Biology (2018), Volume 45, Issue 1, with the title Human population genetics of the Mediterranean.

Among the most interesting articles (emphasis mine):

Iron Age Italic population genetics: the Piceni from Novilara (8th–7th century BC), by Serventi, Panicucci, Bodega, et al.

Background: Archaeological data provide evidence that Italy, during the Iron Age, witnessed the appearance of the first communities with well defined cultural identities. To date, only a few studies report genetic data about these populations and, in particular, the Piceni have never been analysed.

Aims: To provide new data about mitochondrial DNA (mtDNA)

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Language continuity despite population replacement in Remote Oceania

New article (behind paywall) Language continuity despite population replacement in Remote Oceania, by Posth et al., Nat. Ecol. Evol. (2018).

Abstract:

Recent genomic analyses show that the earliest peoples reaching Remote Oceania—associated with Austronesian-speaking Lapita culture—were almost completely East Asian, without detectable Papuan ancestry. However, Papuan-related genetic ancestry is found across present-day Pacific populations, indicating that peoples from Near Oceania have played a significant, but largely unknown, ancestral role. Here, new genome-wide data from 19 ancient South Pacific individuals provide direct evidence of a so-far undescribed Papuan expansion into Remote Oceania starting ~2,500 yr BP, far earlier than previously

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Consequences of O&M 2018 (I): The latest West Yamna “outlier”

This is the first of a series of posts analyzing the findings of the recent Nature papers Olalde et al.(2018) and Mathieson et al.(2018) (abbreviated O&M 2018).

As expected, the first Y-DNA haplogroup of a sample from the North Pontic region (apart from an indigenous European I2 subclade) during its domination by the Yamna culture is of haplogroup R1b-L23, and it is dated ca. 2890-2696 BC. More specifically, it is of Z2103 subclade, the main lineage found to date in Yamna samples. The site in question is Dereivka, “in the southern part of the middle … Read the rest “Consequences of O&M 2018 (I): The latest West Yamna “outlier””

Reactionary views on new Yamna and Bell Beaker data, and the newest IECWT model

You might expect some rambling about bad journalism here, but I don’t have time to read so much garbage to analyze them all. We have seen already what they did with the “blackness” or “whiteness” of the Cheddar Man: no paper published, just some informal data, but too much sensationalism already.

Some people who supported far-fetched theories on Indo-European migrations or common European haplogroups are today sharing some weeping and gnashing of teeth around forums and blogs – although, to be fair, neither Olalde et al. (2018) nor Mathieson et al. (2018) actually gave any surprising new data … Read the rest “Reactionary views on new Yamna and Bell Beaker data, and the newest IECWT model”

Ancestral heterogeneity of ancient Eurasians

Josif Lazaridis tweets about an interesting preprint at BioRxiv (eclipsed by today’s Nature papers), Ancestral heterogeneity of ancient Eurasians, by Daniel Shriner.

Abstract:

Supervised clustering or projection analysis is a staple technique in population genetic analysis. The utility of this technique depends critically on the reference panel. The most commonly used reference panel in the analysis of ancient DNA to date is based on the Human Origins array. We previously described a larger reference panel that captures more ancestries on the global level. Here, I reanalyzed DNA data from 279 ancient Eurasians using our reference panel, finding substantially

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