Early Iranian steppe nomadic pastoralists also show Y-DNA bottlenecks and R1b-L23

New paper (behind paywall) Ancient genomes suggest the eastern Pontic-Caspian steppe as the source of western Iron Age nomads, by Krzewińska et al. Science (2018) 4(10):eaat4457.

Interesting excerpts (emphasis mine, some links to images and tables deleted for clarity):

Late Bronze Age (LBA) Srubnaya-Alakulskaya individuals carried mtDNA haplogroups associated with Europeans or West Eurasians (17) including H, J1, K1, T2, U2, U4, and U5 (table S3). In contrast, the Iron Age nomads (Cimmerians, Scythians, and Sarmatians) additionally carried mtDNA haplogroups associated with Central Asia and the Far East (A, C, D, and M). The absence of East Asian mitochondrial lineages in the more eastern and older Srubnaya-Alakulskaya population suggests that the appearance of East Asian haplogroups in the steppe populations might be associated with the Iron Age nomads, starting with the Cimmerians.

scythian-cimmerian-sarmatian-y-dna-mtdna

#UPDATE (5 OCT 2018): Some Y-SNP calls have been published in a Molgen thread, with:

  • Srubna samples have possibly two R1a-Z280, three R1a-Z93.
  • Cimmerians may not have R1b: cim357 is reported as R1a.
  • Some Scythians have low coverage to the point where it is difficult to assign even a reliable haplogroup (they report hg I2 for scy301, or E for scy197, probably based on some shared SNPs?), but those which can be reliably assigned seem R1b-Z2103 [hence probably the use of question marks and asterisks in the table, and the assumption of the paper that all Scythians are R1b-L23]:
    • The most recent subclade is found in scy305: R1b-Z2103>Z2106 (Z2106+, Y12538/Z8131+)
    • scy304: R1b-Z2103 (M12149/Y4371/Z8128+).
    • scy009: R1b-P312>U152>L2 (P312+, U152?, L2+)?
  • Sarmatians are apparently all R1a-Z93 (including tem002 and tem003);
  • You can read here the Excel file with (some probably as speculative as the paper’s own) results.

    About the PCA

    1. Srubnaya-Alakulskaya individuals exhibited genetic affinity to northern and northeastern present-day Europeans, and these results were also consistent with outgroup f3 statistics.
    2. The Cimmerian individuals, representing the time period of transition from Bronze to Iron Age, were not homogeneous regarding their genetic similarities to present-day populations according to the PCA. F3 statistics confirmed the heterogeneity of these individuals in comparison with present-day populations
    3. The Scythians reported in this study, from the core Scythian territory in the North Pontic steppe, showed high intragroup diversity. In the PCA, they are positioned as four visually distinct groups compared to the gradient of present-day populations:
      1. A group of three individuals (scy009, scy010, and scy303) showed genetic affinity to north European populations (…).
      2. A group of four individuals (scy192, scy197, scy300, and scy305) showed genetic similarities to southern European populations (…).
      3. A group of three individuals (scy006, scy011, and scy193) located between the genetic variation of Mordovians and populations of the North Caucasus (…). In addition, one Srubnaya-Alakulskaya individual (kzb004), the most recent Cimmerian (cim357), and all Sarmatians fell within this cluster. In contrast to the Scythians, and despite being from opposite ends of the Pontic-Caspian steppe, the five Sarmatians grouped close together in this cluster.
      4. A group of three Scythians (scy301, scy304, and scy311) formed a discrete group between the SC and SE and had genetic affinities to present-day Bulgarian, Greek, Croatian, and Turkish populations (…).
      5. Finally, one individual from a Scythian cultural context (scy332) is positioned outside of the modern West Eurasian genetic variation (Fig. 1C) but shared genetic drift with East Asian populations.
    scythian-cimmerian-pca
    Radiocarbon ages and geographical locations of the ancient samples used in this study. Figure panels presented (Left) Bar plot visualizing approximate timeline of presented and previously published individuals. (Right) Principal component analysis (PCA) plot visualizing 35 Bronze Age and Iron Age individuals presented in this study and in published ancient individuals (table S5) in relation to modern reference panel from the Human Origins data set (41).

    Cimmerians

    The presence of an SA component (as well as finding of metals imported from Tien Shan Mountains in Muradym 8) could therefore reflect a connection to the complex networks of the nomadic transmigration patterns characteristic of seasonal steppe population movements. These movements, although dictated by the needs of the nomads and their animals, shaped the economic and social networks linking the outskirts of the steppe and facilitated the flow of goods between settled, semi-nomadic, and nomadic peoples. In contrast, all Cimmerians carried the Siberian genetic component. Both the PCA and f4 statistics supported their closer affinities to the Bronze Age western Siberian populations (including Karasuk) than to Srubnaya. It is noteworthy that the oldest of the Cimmerians studied here (cim357) carried almost equal proportions of Asian and West Eurasian components, resembling the Pazyryks, Aldy-Bel, and Iron Age individuals from Russia and Kazakhstan (12). The second oldest Cimmerian (cim358) was also the only one with both uniparental markers pointing toward East Asia. The Q1* Y chromosome sublineage of Q-M242 is widespread among Asians and Native Americans and is thought to have originated in the Altai Mountains (24)

    Scythians

    In contrast to the eastern steppe Scythians (Pazyryks and Aldy-Bel) that were closely related to Yamnaya, the western North Pontic Scythians were instead more closely related to individuals from Afanasievo and Andronovo groups. Some of the Scythians of the western Pontic-Caspian steppe lacked the SA and the East Eurasian components altogether and instead were more similar to a Montenegro Iron Age individual (3), possibly indicating assimilation of the earlier local groups by the Scythians.

    Toward the end of the Scythian period (fourth century CE), a possible direct influx from the southern Ural steppe zone took place, as indicated by scy332. However, it is possible that this individual might have originated in a different nomadic group despite being found in a Scythian cultural context.

    scythian-alakul-variation
    Genetic diversity and ancestral components of Srubnaya-Alakulskaya population.(here called “Srubnaya”): (Left) Mean f3 statistics for Srubnaya and other Bronze Age populations. Srubnaya group was color-coded the same as with PCA. (Right) Pairwise mismatch estimates for Bronze Age populations.

    Comments

    I am surprised to find this new R1b-L23-based bottleneck in Eastern Iranian expansions so late, but admittedly – based on data from later times in the Pontic-Caspian steppe near the Caucasus – it was always a possibility. The fact that pockets of R1b-L23 lineages remained somehow ‘hidden’ in early Indo-Iranian communities was clear already since Narasimhan et al. (2018), as I predicted could happen, and is compatible with the limited archaeological data on Sintashta-Potapovka populations outside fortified settlements. I already said that Corded Ware was out of Indo-European migrations then, this further supports it.

    Even with all these data coming just from a north-west Pontic steppe region (west of the Dnieper), these ‘Cimmerians’ – or rather the ‘Proto-Scythian’ nomadic cultures appearing before ca. 800 BC in the Pontic-Caspian steppes – are shown to be probably formed by diverse peoples from Central Asia who brought about the first waves of Siberian ancestry (and Asian lineages) seen in the western steppes. You can read about a Cimmerian-related culture, Anonino, key for the evolution of Finno-Permic peoples.

    Also interesting about the Y-DNA bottleneck seen here is the rejection of the supposed continuous western expansions of R1a-Z645 subclades with steppe tribes since the Bronze Age, and thus a clearest link of the Hungarian Árpád dynasty (of R1a-Z2123 lineage) to either the early Srubna-related expansions or – much more likely – to the actual expansions of Hungarian tribes near the Urals in historic times.

    NOTE. I will add the information of this paper to the upcoming post on Ugric and Samoyedic expansions, and the late introduction of Siberian ancestry to these peoples.

    A few interesting lessons to be learned:

    • Remember the fantasy story about that supposed steppe nomadic pastoralist society sharing different Y-DNA lineages? You know, that Yamna culture expanding with R1b from Khvalynsk-Repin into the whole Pontic-Caspian steppes and beyond, developing R1b-dominated Afanasevo, Bell Beaker, and Poltavka, but suddenly appearing (in the middle of those expansions through the steppes) as a different culture, Corded Ware, to the north (in the east-central European forest zone) and dominated by R1a? Well, it hasn’t happened with any other steppe migration, so…maybe Proto-Indo-Europeans were that kind of especially friendly language-teaching neighbours?
    • Remember that ‘pure-R1a’ Indo-Slavonic society emerged from Sintashta ca. 2100 BC? (or even Graeco-Aryan??) Hmmmm… Another good fantasy story that didn’t happen; just like a central-east European Bronze Age Balto-Slavic R1a continuity didn’t happen, either. So, given that cultures from around Estonia are those showing the closest thing to R1a continuity in Europe until the Iron Age, I assume we have to get ready for the Gulf of Finland Balto-Slavic soon.
    • Remember that ‘pure-R1a’ expansion of Indo-Europeans based on the Tarim Basin samples? This paper means ipso facto an end to the Tarim Basin – Tocharian artificial controversy. The Pre-Tocharian expansion is represented by Afanasevo, and whether or not (Andronovo-related) groups of R1a-Z645 lineages replaced part or eventually all of its population before, during, or after the Tocharian expansion into the Tarim Basin, this does not change the origin of the language split and expansion from Yamna to Central Asia; just like this paper does not change the fact that these steppe groups were Proto-Iranian (Srubna) and Eastern Iranian (Scythian) speakers, regardless of their dominant haplogroup.
    • And, best of all, remember the Copenhagen group’s recent R1a-based “Indo-Germanic” dialect revival vs. the R1b-Tocharo-Italo-Celtic? Yep, they made that proposal, in 2018, based on the obvious Yamna—R1b-L23 association, and the desire to support Kristiansen’s model of Corded Ware – Indo-European expansion. Pepperidge Farm remembers. This new data on Early Iranians means another big NO to that imaginary R1a-based PIE society. But good try to go back to Gimbutas’ times, though.
    olander-classificatoin
    Olander’s (2018) tree of Indo-European languages. Presented at Languages and migrations in pre-historic Europe (7-12 Aug 2018)

    Do you smell that fresher air? It’s the Central and East European post-Communist populist and ethnonationalist bullshit (viz. pure blond R1a-based Pan-Nordicism / pro-Russian Pan-Slavism / Pan-Eurasianism, as well as Pan-Turanism and similar crap from the 19th century) going down the toilet with each new paper.

    #EDIT (5 OCT 2018): It seems I was too quick to rant about the consequences of the paper without taking into account the complexity of the data presented. Not the first time this impulsivity happens, I guess it depends on my mood and on the time I have to write a post on the specific work day…

    While the data on Srubna, Cimmerians, and Sarmatians shows clearer Y-DNA bottlenecks (of R1a-Z645 subclades) with the new data, the Scythian samples remain controversial, because of the many doubts about the haplogroups (although the most certain cases are R1b-Z2103), their actual date, and cultural attribution. However, I doubt they belong to other peoples, given the expansionist trends of steppe nomads before, during, and after Scythians (as shown in statistical analyses), so most likely they are Scythian or ‘Para-Scythian’ nomadic groups that probably came from the east, whether or not they incorporated Balkan populations. This is further supported by the remaining R1b-P312 and R1b-Z2103 populations in and around the modern Eurasian steppe region.

    scythian-peoples-balkans
    Early Iron Age cultures of the Carpathian basin ca. 7-6th century BC, including steppe groups Basarabi and Scythians. Ďurkovič et al. (2018).

    You can find an interesting and detailed take on the data published (in Russian) at Vol-Vlad’s LiveJournal (you can read an automatic translation from Google). I think that post is maybe too detailed in debunking all information associated to the supposed Scythians – to the point where just a single sample seems to be an actual Scythian (?!) -, but is nevertheless interesting to read the potential pitfalls of the study.

    Related

    Corded Ware—Uralic (II): Finno-Permic and the expansion of N-L392/Siberian ancestry

    finno-ugric-samoyedic

    This is the second of four posts on the Corded Ware—Uralic identification:

    I read from time to time that “we have not sampled Uralic speakers yet”, and “we are waiting to see when Uralic-speaking peoples are sampled”. Are we, though?

    Proto-language homelands are based on linguistic data, such as guesstimates for dialectal evolution, loanwords and phonetic changes for language contacts, toponymy for ancient territories, etc. depending on the available information. The trace is then followed back, using available archaeological data, from the known historic speakers and territory to the appropriate potential prehistoric cultures. Only then can genetic analyses help us clarify the precise prehistoric population movements that better fit the models.

    uralic-language-family
    The traditional family tree of the Uralic branches. Kallio (2014)

    The linguistic homeland

    We thought – using linguistic guesstimates and fitting prehistoric cultures and their expansion – that Yamna was the Late Proto-Indo-European culture, so when Yamna was sampled, we had Late Proto-Indo-Europeans sampled. Simple deduction.

    We thought that north-eastern Europe was a Uralic-speaking area during the Neolithic:

    • For those supporting a western continuity (and assuming CWC was Indo-European), the language was present at least since the Comb Ware culture, potentially since the Mesolithic.
    • For those supporting a late introduction into Finland, Uralic expanded the latest with Abashevo-related movements after its incorporation of Volosovo and related hunter-gatherers.

    The expansion to the east must have happened through progressive infiltrations with Seima-Turbino / Andronovo-related expansions.

    uralic-time-space
    Some datings for the traditional proto-stages from Uralic to Finnic. Kallio (2014).

    Finding the linguistic homeland going backwards can be described today as follows:

    I. Proto-Fennic homeland

    Based on the number of Baltic loanwords, not attested in the more eastern Uralic branches (and reaching only partially Mordvinic), the following can be said about western Finno-Permic languages (Junttila 2014):

    The Volga-Kama Basin lies still too far east to be included in a list of possible contact locations. Instead, we could look for the contact area somewhere between Estonia in the west and the surroundings of Moscow in the east, a zone with evidence of Uralic settlement in the north and Baltic on the south side.

    The only linguistically well-grounded version of the Stone Age continuation theory was presented by Mikko Korhonen in 1976. Its validity, however, became heavily threatened when Koivulehto 1983a-b proved the existence of a Late Proto-Indo-European or Pre-Baltic loanword layer in Saami, Finnic, and Mordvinic. Since this layer must precede the Baltic one and it was presumably acquired in the Baltic Sea region, Koivulehto posited it on the horizon of the Battle Axe period. This forces a later dating for the Baltic–Finnic contacts.

    Today the Battle Axe culture is dated at 3200 to 3000 BC, a period far too remote to correspond linguistically with Proto-Baltic (Kallio 1998a).

    Since the Baltic contacts began at a very initial phase of Proto-Finnic, the language must have been relatively uniform at that time. Hence, if we consider that the layer of Baltic loanwords may have spread over the Gulf of Finland at that time, we could also insist that the whole of the Proto-Finnic language did so.

    migration-theory
    Prehistoric Balts as the southern neighbours of Proto-Finnic speakers. 1 = The approximated area of Proto-Uralic. 2 = The approximated area of Finnic during the Iron Age. 3 = The area of ancient Baltic hydronyms. 4 = The area of Baltic languages in about 1200 AD. 5 = The problem: When did Uralic expand westwards and when did it meet Baltic? Junntila (2012).

    II. Proto-Finno-Saamic homeland

    The evidence of continued Palaeo-Germanic loanwords (from Pre- to Proto-Germanic stages) is certainly the most important data to locate the Finno-Saamic homeland, and from there backwards into the true Uralic homeland. Following Kallio (2017):

    (…) the loanword evidence furthermore suggests that the ancestors of Finnic and Saamic had at least phonologically remained very close to Proto-Uralic as late as the Bronze Age (ca. 1700–500 BC). In particular, certain loanwords, whose Baltic and Germanic sources point to the first millennium BC, after all go back to the Finno-Saamic proto-stage, which is phonologically almost identical to the Uralic proto-stage (see especially the table in Sammallahti 1998: 198–202). This being the case, Dahl’s wave model could perhaps have some use in Uralic linguistics, too.

    The presence of Pre-Germanic loanwords points rather to the centuries around the turn of the 2nd – 1st millennium BC or earlier. Proto-Germanic words must have been borrowed before the end of Germanic influence in the eastern Baltic at the beginning of the Iron Age, which sets a clear terminus ante quem ca. 800 BC.

    The arrival of Bell Beaker peoples in Scandinavia ca. 2350 BC, heralding the formation of the Dagger Period, as well as the development of Pre-Germanic in common with Finnic-like populations point to the late 3rd / early 2nd millennium BC as the first time of close interaction through the Baltic region.

    III. Proto-Uralic homeland

    (…) the earliest Indo-European loanwords in the Uralic languages (…) show that Proto-Uralic cannot have been spoken much earlier than Proto-Indo-European dated about 3500 BC (Koivulehto 2001: 235, 257). As the same loanword evidence naturally also shows that the Uralic and Indo-European homelands were not located far from one another, the Uralic homeland can most likely be located in the Middle and Upper Volga region, right north of the Indo-European homeland*. From the beginning of the Subneolithic period about 5900 BC onwards, this region was an important innovation centre, from where several cultural waves spread to the Finnish Gulf area, such as the Sperrings Ware wave about 4900 BC, the Combed Ware wave about 3900 BC, and the Netted Ware wave about 1900 BC (Carpelan & Parpola 2001: 78–90).

    The mainstream position is nowadays trying to hold together the traditional views of Corded Ware as Indo-European, and a Uralic Fennoscandia during the Bronze Age.

    The following is an example of how this “Volosovo/Forest Zone hunter-gatherer theory” of Uralic origins looks like, as a ‘mixture’ of cultures and languages that benefits from the lack of genetic data for certain regions and periods (taken from Parpola 2018):

    asbestos-ware
    The extent of Typical Comb Ware (TCW), Asbestos- and Organic-tempered Wares (AOW) and Volosovo and Garino-Bor cultures; areas with deposits of native copper in Karelia and copperbearing sandstone in Volga-Kama-area are marked dark gray (after Zhuravlev 1977; Krajnov 1987; Nagovitsyn 1987; Chernykh 1992; Carpelan 1999; Zhul´nikov 1999). From Nordqvist et al. (2012).

    The Corded Ware (or Battle Axe) culture intruded into the Eastern Baltic and coastal Finland already around 3100 BCE. The continuity hypothesis maintains that the early Proto-Finnic speakers of the coastal regions, who had come to Finland in the 4th millennium BCE with the Comb-Pitted Ware, coexisted with the Corded Ware newcomers, gradually adopting their pastoral culture and with it a number of NW-IE loanwords, but assimilating the immigrants linguistically.

    The fusion of the Corded Ware and the local Comb-Pitted Ware culture resulted into the formation of the Kiukais culture (c. 2300–1500) of southwestern Finland, which around 2300 received some cultural impulses from Estonia, manifested in the appearance of the Western Textile Ceramic (which is different from the more easterly Textile Ceramic or Netted Ware, and which is first attested in Estonia c. 2700 BCE, cf. Kriiska & Tvauri 2007: 88), and supposed to have been accompanied by an influx of loanwords coming from Proto-Baltic. At the same time, the Kiukais culture is supposed to have spread the custom of burying chiefs in stone cairns to Estonia.

    The coming of the Corded Ware people and their assimilation created a cultural and supposedly also a linguistic split in Finland, which the continuity hypothesis has interpreted to mean dividing Proto-Saami-Finnic unity into its two branches. Baltic Finnic, or simply Finnic, would have emerged in the coastal regions of Finland and in the northern East Baltic, while preforms of Saami would have been spoken in the inland parts of Finland.

    The Nordic Bronze Age culture, correlated above with early Proto-Germanic, exerted a strong influence upon coastal Finland and Estonia 1600–700 BCE. Due to this, the Kiukais culture was transformed into the culture of Paimio ceramics (c. 1600–700 BCE), later continued by Morby ceramics (c. 700 BCE – 200 CE). The assumption is that clear cultural continuity was accompanied by linguistic continuity. Having assimilated the language of the Germanic traders and relatively few settlers of the Bronze Age, the language of coastal Finland is assumed to have reached the stage of Proto-Finnish at the beginning of the Christian era. In Estonia, the Paimio ceramics have a close counterpart in the contemporaneous Asva ceramics.

    Eastern homelands?

    I will not comment on Siberian or Central Asian homeland proposals, because they are obviously not mainstream, still less today when we know that Uralic was certainly in contact with Proto-Indo-European, and then with Pre- and Proto-Indo-Iranian, as supported even by the Copenhagen group in Damgaard et al. (2018).

    This is what Kallio (2017) has to say about the agendas behind such proposals:

    Interestingly, the only Uralicists who generally reject the Central Russian homeland are the Russian ones who prefer the Siberian homeland instead. Some Russians even advocate that the Central Russian homeland is only due to Finnish nationalism or, as one of them put it a bit more tactfully, “the political and ideological situation in Finland in the first decades of the 20th century” (Napolskikh 1995: 4).

    Still, some Finns (and especially those who also belong to the “school who wants it large and wants it early”) simultaneously advocate that exactly the same Central Russian homeland is due to Finnlandisierung (Wiik 2001: 466).

    Hence, for those of you willing to learn about fringe theories not related to North-Eastern Europe, you also have then the large and early version of the Uralic homeland, with Wiik’s Palaeolithic continuity of Uralic peoples spread over all of eastern and central Europe (hence EHG and R1a included):

    atlantic-finnic-theory
    Palaeolithic boat peoples and Finno-Ugric. Source

    These fringe Finnish theories look a lot like the Corded Ware expansion… Better not go the Russian or Finnish nationalist ways? Agreed then, let’s discuss only rational proposals based on current data.

    The archaeological homeland

    For a detailed account of the Corded Ware expansion with Battle Axe, Fatyanovo-Balanovo, and Abashevo groups into the area, you can read my recent post on the origin of R1a-Z645.

    1. Textile ceramics

    During the 2nd millennium BC, textile impressions appear in pottery as a feature across a wide region, from the Baltic area through the Volga to the Urals, in communities that evolve from late Corded Ware groups without much external influence.

    While it has been held that this style represents a north-west expansion from the Volga region (with the “Netted Ware” expansion), there are actually at least two original textile styles, one (earlier) in the Gulf of Finland, common in the Kiukainen pottery, which evolves into the Textile ware culture proper, and another which seems to have an origin in the Middle Volga region to the south-east.

    The Netted ware culture is the one that apparently expands into inner Finland – a region not densely occupied by Corded Ware groups until then. There are, however, no clear boundaries between groups of both styles; textile impressions can be easily copied without much interaction or population movement; and the oldest textile ornamentation appeared on the Gulf of Finland. Hence the tradition of naming all as groups of Textile ceramics.

    textile-ware-cultures
    Maximum distribution of Textile ceramics during the Bronze Age (ca. 2000-800 BC). Asbestos-tempered ware lies to the north (and is also continued in western Fennoscandia).

    The fact that different adjacent groups from the Gulf of Finland and Forest Zone share similar patterns making it very difficult to differentiate between ‘Netted Ware’ or ‘Textile Ware’ groups points to:

    • close cultural connections that are maintained through the Gulf of Finland and the Forest Zone after the evolution of late Corded Ware groups; and
    • no gross population movements in the original Battle Axe / Fatyanovo regions, except for the expansion of Netted Ware to inner Finland, Karelia, and the east, where the scattered Battle Axe finds and worsening climatic conditions suggest most CWC settlements disappeared at the end of the 3rd millennium BC and recovered only later.

    NOTE. This lack of population movement – or at least significant replacement by external, non-CWC groups – is confirmed in genetic investigation by continuity of CWC-related lineages (see below).

    The technology present in Textile ceramics is in clear contrast to local traditions of sub-Neolithic Lovozero and Pasvik cultures of asbestos-tempered pottery to the north and east, which point to a different tradition of knowledge and learning network – showing partial continuity with previous asbestos ware, since these territories host the main sources of asbestos. We have to assume that these cultures of northern and eastern Fennoscandia represent Palaeo-European (eventually also Palaeo-Siberian) groups clearly differentiated from the south.

    The Chirkovo culture (ca. 1800-700 BC) forms on the middle Volga – at roughly the same time as Netted Ware formed to the west – from the fusion of Abashevo and Balanovo elites on Volosovo territory, and is also related (like Abashevo) to materials of the Seima-Turbino phenomenon.

    Bronze Age ethnolinguistic groups

    In the Gulf of Finland, Kiukainen evolves into the Paimio ceramics (in Finland) — Asva Ware (in Estonia) culture, which lasts from ca. 1600 to ca. 700 BC, probably representing an evolving Finno-Saamic community, while the Netted Ware from inner Finland (the Sarsa and Tomitsa groups) and the groups from the Forest Zone possibly represent a Volga-Finnic community.

    NOTE. Nevertheless, the boundaries between Textile ceramic groups are far from clear, and inner Finland Netted Ware groups seem to follow a history different from Netted Ware groups from the Middle and Upper Volga, hence they could possibly be identified as an evolving Pre-Saamic community.

    Based on language contacts, with Early Baltic – Early Finnic contacts starting during the Iron Age (ca. 500 BC onwards), this is a potential picture of the situation at the end of this period, when Germanic influence on the coast starts to fade, and Lusatian culture influence is stronger:

    aikio-finnic-saamic
    The linguistic situation in Lapland and the northern Baltic Sea Area in the Early Iron Age prior to the expansion of Saami languages; the locations of the language groups are schematic. The black line indicates the distribution of Saami languages in the 19th century, and the gray line their approximate maximal distribution before the expansion of Finnic. Aikio (2012)

    The whole Finno-Permic community remains thus in close contact, allowing for the complicated picture that Kallio mentions as potentially showing Dahl’s wave model for Uralic languages.

    Genetic data shows a uniform picture of these communities, with exclusively CWC-derived ancestry and haplogroups. So in Mittnik et al. (2018) all Baltic samples show R1a-Z645 subclades, while the recent session on Estonian populations in ISBA 8 (see programme in PDF) clearly states that:

    [Of the 24 Bronze Age samples from stone-cist graves] all 18 Bronze Age males belong to R1a.

    Regarding non-Uralic substrates found in Saami, supposedly absorbed during the expansion to the north (and thus representing languages spoken in northern Fennoscandia during the Bronze Age) this is what Aikio (2012) has to say:

    The Saami substrate in the Finnish dialects thus reveals that also Lakeland Saami languages had a large number of vocabulary items of obscure origin. Most likely many of these words were substrate in Lakeland Saami, too, and ultimately derive from languages spoken in the region before Saami. In some cases the loan origin of these words is obvious due to their secondary Proto-Saami vowel combinations such as *ā–ë in *kāvë ‘bend; small bay’ and *šāpšë ‘whitefish’. This substrate can be called ‘Palaeo-Lakelandic’, in contrast to the ‘Palaeo-Laplandic’ substrate that is prominent in the lexicon of Lapland Saami. As the Lakeland Saami languages became extinct and only fragments of their lexicon can be reconstructed via elements preserved in Finnish place-names and dialectal vocabulary, we are not in a position to actually study the features of this Palaeo-Lakelandic substrate. Its existence, however, appears evident from the material above.

    If we wanted to speculate further, based on the data we have now, it is very likely that two opposing groups will be found in the region:

    A) The central Finnish group, in this hypothesis the Palaeo-Lakelandic group, made up of the descendants of the Mesolithic pioneers of the Komsa and Suomusjärvi cultures, and thus mainly Baltic HG / Scandinavian HG ancestry and haplogroups I / R1b(xM269) (see more on Scandinavian HG).

    siberian-ancestry-map
    Frequency map of the so-called ‘Siberian’ component. From Tambets et al. (2018).

    B) Lapland and Kola were probably also inhabited by similar Mesolithic populations, until it was eventually assimilated by expanding Siberian groups (of Siberian ancestry and N1c-L392 lineages) from the east – entering the region likely through the Kola peninsula – , forming the Palaeo-Laplandic group, which was in turn later replaced by expanding Proto-Saamic groups.

    Siberian ancestry appears first in Fennoscandia at Bolshoy Oleni Ostrov ca. 1520 BC, with haplogroup N1c-L392 (2 samples, BOO002 and BOO004), and with Siberian ancestry. This is their likely movement in north-eastern Europe, from Lamnidis et al (2018):

    The large Siberian component in the Bolshoy individuals from the Kola Peninsula provides the earliest direct genetic evidence for an eastern migration into this region. Such contact is well documented in archaeology, with the introduction of asbestos-mixed Lovozero ceramics during the second millenium BC, and the spread of even-based arrowheads in Lapland from 1,900 BCE. Additionally, the nearest counterparts of Vardøy ceramics, appearing in the area around 1,600-1,300 BCE, can be found on the Taymyr peninsula, much further to the east. Finally, the Imiyakhtakhskaya culture from Yakutia spread to the Kola Peninsula during the same period.

    saamic-lovozero-pca
    PCA plot of 113 Modern Eurasian populations, with individuals from this study projected on the principal components. Uralic speakers are highlighted in light purple. Image modified from Lamnidis et al. (2018)

    Obviously, these groups of asbestos-tempered ware are not connected to the Uralic expansion. From the same paper:

    The fact that the Siberian genetic component is consistently shared among Uralic-speaking populations, with the exceptions of Hungarians and the non-Uralic speaking Russians, would make it tempting to equate this component with the spread of Uralic languages in the area. However, such a model may be overly simplistic. First, the presence of the Siberian component on the Kola Peninsula at ca. 4000 yBP predates most linguistic estimates of the spread of Uralic languages to the area. Second, as shown in our analyses, the admixture patterns found in historic and modern Uralic speakers are complex and in fact inconsistent with a single admixture event. Therefore, even if the Siberian genetic component partly spread alongside Uralic languages, it likely presented only an addition to populations carrying this component from earlier.

    2. The Early Iron Age

    The Ananino culture appears in the Vyatka-Kama area, famed for its metallurgy, with traditions similar to the North Pontic area, by this time developing Pre-Sauromatian traditions. It expanded to the north in the first half of the first millennium BC, remaining in contact with the steppes, as shown by the ‘Scythian’ nature of its material culture.

    NOTE. The Ananino culture can be later followed through its zoomorphic styles into Iron Age Pjanoborskoi and Gljadenovskoi cultures, later to Ural-Siberian Middle Age cultures – Itkuska, Ust’-Poluiska, Kulaiska cultures –, which in turn can be related as prototypes of medieval Permian styles.

    ananino-culture-homeland
    Territory of (early and maximum) Ananino material culture. Vasilyev (2002).

    At the same time as the Ananino culture begins to expand ca. 1000 BC, the Netted Ware tradition from the middle Oka expanded eastwards into the Oka-Vyatka interfluve of the middle Volga region, until then occupied by the Chirkovo culture. Eventually the Akozino or Akhmylovo group (ca. 800-300 BC) emerged from the area, showing a strong cultural influence from the Ananino culture, by that time already expanding into the Cis-Urals region.

    The Akozino culture remains nevertheless linked to the western Forest Zone traditions, with long-ranging influences from as far as the Lusatian culture in Poland (in metallurgical techniques), which at this point is also closely related with cultures from Scandinavia (read more on genetics of the Tollense Valley).

    malar-celts-ananino
    Mälar celts and molds for casting (a) and the main distribution area (в) of Mälar-type celts of the Mälar type in the Volga-Kama region (according to Kuzminykh 1983: figure 92) and Scandinavia (according to Baudou 1960: Karte 10); Ananino celts and molds for casting (б) and the main distribution area (г) of the distribution of the celts of the Ananino type in the Volga-Kama area (according to Kuzminykh 1983: figure 9); dagger of Ananino type (д).Map from (Yushkova 2010)

    Different materials from Akozino reach Fennoscandia late, at the end of the Bronze Age and beginning of the Early Iron Age, precisely when the influence of the Nordic Bronze Age culture on the Gulf of Finland was declining.

    This is a period when Textile ceramic cultures in north-eastern Europe evolve into well-armed chiefdom-based groups, with each chiefdom including thousands or tens of thousands, with the main settlements being hill forts, and those in Fennoscandia starting ca. 1000-400 BC.

    Mälar-type celts and Ananino-type celts appear simultaneously in Fennoscandia and the Forest Zone, with higher concentrations in south-eastern Sweden (Mälaren) and the Volga-Kama region, supporting the existence of a revived international trade network.

    akozino-malar-axes-fennoscandia
    Distribution of the Akozino-Mälar axes according to Sergej V. Kuz’minykh (1996: 8, Abb. 2).

    The Paimio—Asva Ware culture evolves (ca. 700-200 BC) into the Morby (in Finland) — Ilmandu syle (in Estonia, Latvia, and Mälaren) culture. The old Paimio—Asva tradition continues side by side with the new one, showing a clear technical continuity with it, but with ornamentation compared to the Early Iron Age cultures of the Upper Volga area. This new south-eastern influence is seen especially in:

    • Akozino-Mälar axes (ca. 800-500 BC): introduced into the Baltic area in so great numbers – especially south-western Finland, the Åland islands, and the Mälaren area of eastern Sweden – that it is believed to be accompanied by a movement of warrior-traders of the Akozino-Akhmylovo culture, following the waterways that Vikings used more than a thousand years later. Rather than imports, they represent a copy made with local iron sources.
    • Tarand graves (ca. 500 BC – AD 400): these ‘mortuary houses’ appear in the coastal areas of northern and western Estonia and the islands, at the same time as similar graves in south-western Finland, eastern Sweden, northern Latvia and Courland. Similar burials are found in Akozino-Akhmylovo, with grave goods also from the upper and middle Volga region, while grave goods show continuity with Textile ware.

    The use of asbestos increases in mainland Finnish wares with Kjelmøy Ware (ca. 700 BC – AD 300), which replaced the Lovozero Ware; and in the east in inner Finland and Karelia with the Luukonsaari and Sirnihta wares (ca. 700-500 BC – AD 200), where they replaced the previous Sarsa-Tomitsa ceramics.

    The Gorodets culture appears during the Scythian period in the forest-steppe zone north and west of the Volga, shows fortified settlements, and there are documented incursions of Gorodets iron makers into the Samara valley, evidenced by deposits of their typical pottery and a bloom or iron in the region.

    Iron Age ethnolinguistic groups

    According to (Koryakova and Epimakhov 2007):

    It is commonly accepted by archaeology, ethnography, and linguistics that the ancestors of the Permian peoples (the Udmurts, Komi-Permians, and Komi-Zyryans) left the sites of Ananyino cultural intercommunity.

    NOTE. For more information on the Late Metal Ages and Early Medieval situation of Finno-Ugric languages, see e.g. South-eastern contact area of Finnic languages in the light of onomastics (Rahkonen 2013).

    finno-saamic-mordvin
    Yakhr-, -khra, yedr-, -dra and yer-/yar, -er(o), -or(o) names of lakes in Central and North Russia and the possible boundary of the proto-language words *jäkra/ä and *järka/ä. Rahkonen (2011)

    Certain innovations shared between Proto-Fennic (identified with the Gulf of Finland) and Proto-Mordvinic (from the Gorodets culture) point to their close contact before the Proto-Fennic expansion, and thus to the identification of Gorodets as Proto-Mordvinic, hence Akozino as Volgaic (Parpola 2018):

    • the noun paradigms and the form and function of individual cases,
    • the geminate *mm (foreign to Proto-Uralic before the development of Fennic under Germanic influence) and other non-Uralic consonant clusters.
    • the change of numeral *luka ‘ten’ with *kümmen.
    • The presence of loanwords of non-Uralic origin, related to farming and trees, potentially Palaeo-European in nature (hence possibly from Siberian influence in north-eastern Europe).
    ananino-textile-ware-cultures
    Map of archaeological cultures in north-eastern Europe ca. 8th-3rd centuries BC. [The Mid-Volga Akozino group not depicted] Shaded area represents the Ananino cultural-historical society. Purple area show likely zones of predominant Siberian ancestry and N1c-L392 lineages. Blue areas likely zones of predominant CWC ancestry and R1a-Z645 lineages. Fading purple arrows represent likely stepped movements of haplogroup N1c-L392 for centuries (Siberian → Ananino → Akozino → Fennoscandia), found eventually in tarand graves. Blue arrows represent eventual expansions of Fennic and (partially displaced) Saamic. Modified image from Vasilyev (2002).

    The introduction of a strongly hierarchical chiefdom system can quickly change the pre-existing social order and lead to a major genetic shift within generations, without a radical change in languages, as shown in Sintashta-Potapovka compared to the preceding Poltavka society (read more about Sintashta).

    Fortified settlements in the region represented in part visiting warrior-traders settled through matrimonial relationships with local chiefs, eager to get access to coveted goods and become members of a distribution network that could guarantee them even military assistance. Such a system is also seen synchronously in other cultures of the region, like the Nordic Bronze Age and Lusatian cultures (Parpola 2013).

    The most likely situation is that N1c subclades were incorporated from the Circum-Artic region during the Anonino (Permic) expansion to the north, later emerged during the formation of the Akozino group (Volgaic, under Anonino influence), and these subclades in turn infiltrated among the warrior traders that spread all over Fennoscandia and the eastern Baltic (mainly among Fennic, Saamic, Germanic, and Balto-Slavic peoples), during the age of hill forts, creating alliances partially based on exogamy strategies (Parpola 2013).

    Over the course of these events, no language change is necessary in any of the cultures involved, since the centre of gravity is on the expanding culture incorporating new lineages:

    • first on the Middle Volga, when Ananino expands to the north, incorporatinig N1c lineages from the Circum-Artic region.
    • then with the expansion of the Akozino-Akhmylovo culture into Ananino territory, admixing with part of its population;
    • then on the Baltic region, when materials are imported from Akozino into Fennoscandia and the eastern Baltic (and vice versa), with local cultures being infiltrated by foreign (Akozino) warrior-traders and their materials;
    • and later with the different population movements that led eventually to a greater or lesser relevance of N1c in modern Finno-Permic populations.

    To argue that this infiltration and later expansion of lineages changed the language in one culture in one of these events seems unlikely. To use this argument of “opposite movement of ethnic and language change” for different successive events, and only on selected regions and cultures (and not those where the greatest genetic and cultural impact is seen, like e.g. Sweden for Akozino materials) is illogical.

    NOTE. Notice how I write here about “infiltration” and “lineages”, not “migration” or “populations”. To understand that, see below the next section on autosomal studies to compare Bronze Age, Iron Age, Medieval and Modern Estonians, and see how little the population of Estonia (homeland of Proto-Fennic and partially of Proto-Finno-Saamic) has changed since the Corded Ware migrations, suggesting genetic continuity and thus mostly close inter-regional and intra-regional contacts in the Forest Zone, hence a very limited impact of the absorbed N1c lineages (originally at some point incorporated from the Circum-Artic region). You can also check on the most recent assessment of R1a vs. N1c in modern Uralic populations.

    Iron Age and later populations

    From the session on Estonian samples on ISBA 8, by Tambets et al.:

    [Of the 13 samples from the Iron Age tarand-graves] We found that the Iron Age individuals do in fact carry chrY hg N3 (…) Furthermore, based on their autosomal data, all of the studied individuals appear closer to hunter-gatherers and modern Estonians than Estonian CWC individuals do.

    EDIT (16 OCT) A recent abstract with Saag as main author (Tambets second) cites 3 out of 5 sampled Iron Age individuals as having haplogroup N3.

    EDIT (28 OCT): Notice also the appearance of N1a1a1a1a1a1a1-L1025 in Lithuania (ca. 300 AD), from Damgaard (Nature 2018); the N1c sample of the Krivichi Pskov Long Barrows culture (ca. 8th-10th c. AD), and N1a1a1a1a1a1a7-Y4341 among late Vikings from Sigtuna (ca. 10th-12th c. AD) in Krzewinska (2018).

    estonian-pca
    PCA of Estonian samples from the Bronze Age, Iron Age and Medieval times. Tambets et al. (2018, upcoming).

    Looking at the plot, the genetic inflow marking the change from the Bronze Age to the Iron Age looks like an obvious expansion of nearby peoples with CWC-related ancestry, i.e. likely from the south-east, near the Middle Volga, where influence of steppe peoples is greater (hence likely Akozino) into a Proto-Fennic population already admixed (since the arrival of Corded Ware groups) with Comb Ware-like populations.

    All of these groups were probably R1a-Z645 (likely R1a-Z283) since the expansion of Corded Ware peoples, with an introduction of some N1c lineages precisely during this Iron Age period. This infiltration of N1c-L392 with Akozino is obviously not directly related to Siberian cultures, given what we know about the autosomal description of Estonian samples.

    Rather, N1c-L392 lineages were likely part of the incoming (Volgaic) Akozino warrior-traders, who settled among developing chiefdoms based on hill fort settlements of cultures all over the Baltic area, and began to appear thus in some of the new tarand graves associated with the Iron Age in north-eastern Europe.f

    A good way to look at this is to realize that no new cluster appears compared to the data we already have from Baltic LN and BA samples from Mittnik et al. (2018), so the Estonian BA and IA clusters must be located (in a proper PCA) in the cline from Pit-Comb Ware culture through Baltic BA to Corded Ware groups:

    baltic-samples
    PCA and ADMIXTURE analysis reflecting three time periods in Northern European prehistory. a Principal components analysis of 1012 present-day West Eurasians (grey points, modern Baltic populations in dark grey) with 294 projected published ancient and 38 ancient North European samples introduced in this study (marked with a red outline). Population labels of modern West Eurasians are given in Supplementary Fig. 7 and a zoomed-in version of the European Late Neolithic and Bronze Age samples is provided in Supplementary Fig. 8. b Ancestral components in ancient individuals estimated by ADMIXTURE (k = 11)

    This genetic continuity from Corded Ware (the most likely Proto-Uralic homeland) to the Proto-Fennic and Proto-Saamic communities in the Gulf of Finland correlates very well with the known conservatism of Finno-Saamic phonology, quite similar to Finno-Ugric, and both to Proto-Uralic (Kallio 2017): The most isolated region after the expansion of Corded Ware peoples, the Gulf of Finland, shielded against migrations for almost 1,500 years, is then the most conservative – until the arrival of Akozino influence.

    NOTE. This has its parallel in the phonetic conservatism of Celtic or Italic compared to Finno-Ugric-influenced Germanic, Balto-Slavic, or Indo-Iranian.

    Only later would certain regions (like Finland or Lappland) suffer Y-DNA bottlenecks and further admixture events associated with population displacements and expansions, such as the spread of Fennic peoples from their Estonian homeland (evidenced by the earlier separation of South Estonian) to the north and east:

    diversification-finnic
    The Finnic family tree. Kallio (2014).

    The initial Proto-Fennic expansion was probably coupled with the expansion of Proto-Saami to the north, with the Kjelmøy Ware absorbing the Siberian population of Lovozero Ware, and potentially in inner Finland and Karelia with the Luukonsaari and Sirnihta wares (Carpelan and Parpola 2017).

    This Proto-Saami population expansion from the mainland to the north, admixing with Lovozero-related peoples, is clearly reflected in the late Iron Age Saamic samples from Levänluhta (ca. 400-800 AD), as a shift (of 2 out of 3 samples) to Siberian-like ancestry from their original CWC_Baltic-like situation (see PCA from Lamnidis et al. 2018 above).

    Also, Volgaic and Permic populations from inner Finland and the Forest Zone to the Cis-Urals and Circum-Artic regions probably incorporate Siberian ancestry and N1c-L392 lineages during these and later population movements, while the westernmost populations – Estonian, Mordvinic – remain less admixed (see PCA from Tambets et al. 2018 below).

    We also have data of N1c-L392 in Nordic territory in the Middle Ages, proving its likely strong presence in the Mälaren area since the Iron Age, with the arrival of Akozino warrior traders. Similarly, it is found among Balto-Slavic groups along the eastern Baltic area. Obviously, no language change is seen in Nordic Bronze Age and Lusatian territory, and none is expected in Estonian or Finnish territory, either.

    Therefore, no “N1c-L392 + Siberian ancestry” can be seen expanding Finno-Ugric dialects, but rather different infiltrations and population movements with limited effects on ancestry and Y-DNA composition, depending on the specific period and region.

    estonians-hungarians-mordvinian
    Selection of the PCA, with the group of Estonians, Mordovians, and Hungarians selected. See Tambets et al. (2018) for more information.

    An issue never resolved

    Because N1c-L392 subclades & Siberian ancestry, which appear in different proportions and with different origins among some modern Uralic peoples, do not appear in cultures supposed to host Uralic-speaking populations until the Iron Age, people keep looking into any direction to find the ‘true’ homeland of those ‘Uralic N1c peoples’? Kind of a full circular reasoning, anyone? The same is valid for R1a & steppe ancestry being followed for ‘Indo-Europeans’, or R1b-P312 & Neolithic farmer ancestry being traced for ‘Basques’, because of their distribution in modern populations.

    I understand the caution of many pointing to the need to wait and see how samples after 2000 BC are like, in every single period, from the middle and upper Volga, Kama, southern Finland, and the Forest Zone between Fennoscandia and the steppe. It’s like waiting to see how people from Western Yamna and the Carpathian Basin after 3000 BC look like, to fill in what is lacking between East Yamna and Bell Beakers, and then between them and every single Late PIE dialect.

    But the answer for Yamna-Bell Beaker-Poltavka peoples during the Late PIE expansion is always going to be “R1b-L23, but with R1a-Z645 nearby” (we already have a pretty good idea about that); and the answer for the Forest Zone and northern Cis- and Trans-Urals area – during the time when Uralic languages are known to have already been spoken there – is always going to be “R1a-Z645, but with haplogroup N nearby”, as is already clear from the data on the eastern Baltic region.

    So, without a previously proposed model as to where those amateurs expressing concern about ‘not having enough data’ expect to find those ‘Uralic peoples’, all this waiting for the right data looks more like a waiting for N1c and Siberian ancestry to pop up somewhere in the historic Uralic-speaking area, to be able to say “There! A Uralic-speaking male!”. Not a very reasonable framework to deal with prehistoric peoples and their languages, I should think.

    But, for those who want to do that, let me break the news to you already:

    ananino-culture-balto-slavic
    First N1c – Finno-Ugric person arrives in Estonia to teach Finno-Saamic to Balto-Slavic peoples.

    And here it is, an appropriate fantasy description of the ethnolinguistic groups from the region. You are welcome:

    • During the Bronze Age, late Corded Ware groups evolve as the western Textile ware Fennic Balto-Slavic group in the Gulf of Finland; the Netted Ware Saamic Balto-Slavic group of inner Finland; the south Netted Ware / Akozino Volgaic Balto-Slavic groups of the Middle Volga; and the Anonino Permic Balto-Slavic group in the north-eastern Forest Zone; all developing still in close contact with each other, allowing for common traits to permeate dialects.
    • These Balto-Slavic groups would then incorporate west of the Urals during and after the Iron Age (ca. 800-500 BC first, and also later during their expansion to the north) limited ancestry and lineages from eastern European hunter-gatherer groups of Palaeo-European Fennic and Palaeo-Siberian Volgaic and Permic languages from the Circum-Artic region, but they adopted nevertheless the language of the newcomers in every single infiltration of N1c lineages and/or admixture with Siberian ancestry. Oh and don’t forget the Saamic peoples from central Sweden, of course, the famous N1c-L392 ‘Rurikid’ lineages expanding Saamic to the north and replacing Proto-Germanic…

    The current model for those obsessed with modern Y-DNA is, therefore, that expanding Neolithic, Bronze Age and Iron Age cultures from north-eastern Europe adopted the languages of certain lineages originally from sub-Neolithic (Scandinavian and Siberian) hunter-gatherer populations of the Circum-Artic region; lineages that these cultures incorporated unevenly during their expansions. Hmmmm… Sounds like an inverse Western movie, where expanding Americans end up speaking Apache, and the eastern coast speaks Spanish until Italian migrants arrive and make everyone speak English… or something. A logic, no-nonsense approach to ethnolinguistic identification.

    I kid you not, this is the kind of models we are going to see very soon. In 2018 and 2019, with ancient DNA able to confirm or reject archaeological hypotheses based on linguistic data, people will keep instead creating new pet theories to support preconceived ideas based on the Y-DNA prevalent among modern populations. That is, information available in the 2000s.

    So what’s (so much published) ancient DNA useful for, exactly?

    [Next post on the subject: Corded Ware—Uralic (III): Seima-Turbino and the Ugric and Samoyedic expansion]

    Related

    Corded Ware—Uralic (I): Differences and similarities with Yamna

    indo-european-uralic-migrations-corded-ware

    This is the first of four posts on the Corded Ware—Uralic identification:

    I was reading The Bronze Age Landscape in the Russian Steppes: The Samara Valley Project (2016), and I was really surprised to find the following excerpt by David W. Anthony:

    The Samara Valley links the central steppes with the western steppes and is a north-south ecotone between the pastoral steppes to the south and the forest-steppe zone to the north [see figure below]. The economic contrast between pastoral steppe subsistence, with its associated social organizations, and forest-zone hunting and fishing economies probably explains the shifting but persistent linguistic border between forest-zone Uralic languages to the north (today largely displaced by Russian) and a sequence of steppe languages to the south, recently Turkic, before that Iranian, and before that probably an eastern dialect of Proto-Indo-European (Anthony 2007). The Samara Valley represents several kinds of borders, linguistic, cultural, and ecological, and it is centrally located in the Eurasian steppes, making it a critical place to examine the development of Eurasian steppe pastoralism.

    uralic-languages-forest-zone-volga
    Language map of the middle Volga-Ural region. After “Geographical Distribution of the Uralic Languages” by Finno-Ugrian Society, Helsinki, 1993.

    Khokhlov (translated by Anthony) further insists on the racial and ethnic divide between both populations, Abashevo to the north, and Poltavka to the south, during the formation of the Abashevo – Sintashta-Potapovka community that gave rise to Proto-Indo-Iranians:

    Among all cranial series in the Volga-Ural region, the Potapovka population represents the clearest example of race mixing and probably ethnic mixing as well. The cultural advancements seen in this period might perhaps have been the result of the mixing of heterogeneous groups. Such a craniometric observation is to some extent consistent with the view of some archaeologists that the Sintashta monuments represent a combination of various cultures (principally Abashevo and Poltavka, but with other influences) and therefore do not correspond to the basic concept of an archaeological culture (Kuzmina 2003:76). Under this option, the Potapovka-Sintashta burial rite may be considered, first, a combination of traits to guarantee the afterlife of a selected part of a heterogeneous population. Second, it reflected a kind of social “caste” rather than a single population. In our view, the decisive element in shaping the ethnic structure of the Potapovka-Sintashta monuments was their extensive mobility over a fairly large geographic area. They obtained knowledge of various cultures from the populations with whom they interacted.

    steppe-lmba-sintashta-potapovka-filatovka
    Late Middle Bronze Age cultures with the Proto-Indo-Iranian Sintashta-Potapovka-Filatovka group (shaded). After Anthony (2007 Figure 15.5), from Anthony (2016).

    Interesting is also this excerpt about the predominant population in the Abashevo – Sintashta-Potapovka admixture (which supports what Chetan said recently, although this does not seemed backed by Y-DNA haplogroups found in the richest burials), coupled with the sign of incoming “Uraloid” peoples from the east, found in both Sintashta and eastern Abashevo:

    The socially dominant anthropological component was Europeoid, possibly the descendants of Yamnaya. The association of craniofacial types with archaeological cultures in this period is difficult, primarily because of the small amount of published anthropological material of the cultures of steppe and forest belt (Balanbash, Vol’sko-Lbishche) and the eastern and southern steppes (Botai-Tersek). The crania associated with late MBA western Abashevo groups in the Don-Volga forest zone were different from eastern Abashevo in the Urals, where the expression of the Old Uraloid craniological complex was increased. Old Uraloid is found also on a single skull of Vol’sko-Lbishche culture (Tamar Utkul VII, Kurgan 4). Potentially related variants, including Mongoloid features, could be found among the Seima-Turbino tribes of the forest-steppe zone, who mixed with Sintashta and Abashevo. In the Sintashta Bulanova cemetery from the western Urals, some individuals were buried with implements of Seima-Turbino type (Khalyapin 2001; Khokhlov 2009; Khokhlov and Kitov 2009). Previously, similarities were noted between some individual skulls from Potapovka I and burials of the much older Botai culture in northern Kazakhstan (Khokhlov 2000a). Botai-Tersek is, in fact, a growing contender for the source of some “eastern” cranial features.

    khvalynsk-yamna-srubna-facial-reconstruction
    Facial reconstructions based on skulls from (a) Khvalynsk II Grave 24, a young adult male; (b) Poludin Grave 6, Yamnaya culture, a mature male (both by A. I. Nechvaloda); and (c) Luzanovsky cemetery, Srubnaya culture (by L. T. Yablonsky). In Khokhlov (2016).

    The wave of peoples associated with “eastern” features can be seen in genetics in the Sintashta outliers from Narasimhan et al. (2018), and it probably will be eventually seen in Abashevo, too. These may be related to the Seima-Turbino international network – but most likely it is directly connected to Sintashta through the starting Andronovo and Seima-Turbino horizons, by admixing of prospective groups and small-scale back-migrations.

    Corded Ware – Yamna similarities?

    So, if peoples of north-eastern Europe have been assumed for a long time to be Uralic speakers, what is happening with the Corded Ware = IE obsession? Is it Gimbutas’ ghost possessing old archaeologists? Probably not.

    It is about certain cultural similarities evident at first sight, which have been traditionally interpreted as a sign of cultural diffusion or migration. Not dissimilar to the many Bell Beaker models available, where each archaeologist is pushing certain differences, mixing what seemed reasonable, what still might seem reasonable, and what certainly isn’t anymore after the latest ancient DNA data.

    kurgan-expansion
    “European dialect” expansion of Proto-Indo-European according to Gimbutas (1963)

    The initial models of Gimbutas, Kristiansen, or Anthony – which are known to many today – were enunciated in the infancy of archaeological studies in the regions, during and just after the fall of the USSR, and before many radiocarbon dates that we have today were published (with radiocarbon dating being still today in need of refinement), so it is only logical that gross mistakes were made.

    We have similar gross mistakes related to the origins of Bell Beakers, and studying them was certainly easier than studying eastern data.

    • Gimbutas believed – based mainly on Kurgan-like burials – that Bell Beaker formed from a combination of Yamna settlers with the Vučedol culture, so she was not that far from the truth.
    • The expansion of Corded Ware from peoples of the North Pontic forest-steppe area, proposed by Gimbutas and later supported also by Kristiansen (1989) as the main Indo-European expansion – , is probably also right about the approximate origins of the culture. Only its ‘Indo-European’ nature is in question, given the differences with Khvalynsk and Yamna evolution.
    • Anthony only claimed that Yamna migrants settled in the Balkans and along the Danube into the Hungarian steppes. He never said that Corded Ware was a Yamna offshoot until after the first genetic papers of 2015 (read about his newest proposal). He initially claimed that only certain neighbouring Corded Ware groups “adopted” Indo-European (through cultural diffusion) because of ‘patron-client’ relationships, and was never preoccupied with the fate of Corded Ware and related cultures in the east European forest zone and Finland.

    So none of them was really that far from the true picture; we might say a lot people are more way off the real picture today than the picture these three researchers helped create in the 1990s and 2000s. Genetics is just putting the last nail in the coffin of Corded Ware as a Yamna offshoot, instead of – as we believed in the 2000s – to Vučedol and Bell Beaker.

    So let’s revise some of these traditional links between Corded Ware and Yamna with today’s data:

    Archaeology

    Even more than genetics – at least until we have an adequate regional and temporary sampling – , archaeological findings lead what we have to know about both cultures.

    It is essential to remember that Corded Ware, starting ca. 3000/2900 BC in east-central Europe, has been proposed to be derived from Early Yamna, which appeared suddenly in the Pontic-Caspian steppes ca. 3300 BC (probably from the late Repin expansion), and expanded to the west ca. 3000.

    Early Yamna is in turn identified as the expanding Late Proto-Indo-European community, which has been confirmed with the recent data on Afanasevo, Bell Beaker, and Sintashta-Potapovka and derived cultures.

    The question at hand, therefore, is if Corded Ware can be considered an offshoot of the Late PIE community, and thus whether the CWC ethnolinguistic community – proven in genetics to be quite homogeneous – spoke a Late PIE dialect, or if – alternatively – it is derived from other neighbouring cultures of the North Pontic region.

    NOTE. The interpretation of an Indo-Slavonic group represented by a previous branching off of the group is untenable with today’s data, since Indo-Slavonic – for those who support it – would itself be a branch of Graeco-Aryan, and Palaeo-Balkan languages expanded most likely with West Yamna (i.e. R1b-L23, mainly R1b-Z2103) to the south.

    The convoluted alternative explanation would be that Corded Ware represents an earlier, Middle PIE branch (somehow carrying R1a??) which influences expanding Late PIE dialects; this has been recently supported by Kortlandt, although this simplistic picture also fails to explain the Uralic problem.

    Kurgans: The Yamna tradition was inherited from late Repin, in turn inherited from Khvalynsk-Novodanilovka proto-Kurgans. As for the CWC tradition, it is unclear if the tumuli were built as a tradition inherited from North and West Pontic cultures (in turn inherited or copied from Khvalynsk-Novodanilovka), such as late Trypillia, late Kvityana, late Dereivka, late Sredni Stog; or if they were built because of the spread of the ‘Transformation of Europe’, set in motion by the Early Yamna expansion ca. 3300-3000 BC (as found in east-central European cultures like Coţofeni, Lizevile, Șoimuș, or the Adriatic Vučedol). My guess is that it inherits an older tradition than Yamna, with an origin in east-central Europe, because of the mound-building distribution in the North Pontic area before the Yamna expansion, but we may never really know.

    pit-graves-central-europe-cwc
    Distribution of Pit-Grave burials west of the Black Sea likely dating to the 2nd half of the IVth millennium BC (triangles: side-crouched burials; filled circles: supine extended burials; open circles: suspected). Frînculeasa, Preda, and Heyd (2015)

    Burial rite: Yamna features (with regional differences) single burials with body on its back, flexed upright knees, poor grave goods, common orientation east-west (heads to the west) inherited from Repin, in turn inherited from Khvalynsk-Novodanilovka. CWC tradition – partially connected to Złota and surrounding east-central European territories (in turn from the Khvalynsk-Novodanilovka expansion) – features single graves, body in fetal position, strict gender differentiation – men on the right, women on the left -, looking to the south, graves with standardized assemblages (objects representing affirmation of battle, hunting, and feasting). The burial rites clearly represent different ideologies.

    pit-grave-burial-schemes
    Left: Pit-Grave burial types expanded with Khvalynsk-Novodanilovka. Right: Pit-Grave burial types associated with the Yamna expansion and influence. Frînculeasa, Preda, and Heyd (2015)

    Corded decoration: Corded ware decoration appears in the Balkans during the 5th millennium, and represents a simple technique whereby a cord is twisted, or wrapped around a stick, and then pressed directly onto the fresh surface of a vessel leaving a characteristic decoration. It appears in many groups of the 5th and 4th millennium BC, but it was Globular Amphorae the culture which popularized the drinking vessels and their corded ornamentation. It appears thus in some regional groups of Yamna, but it becomes the standard pottery only in Corded Ware (especially with the A-horizon), which shows continuity with GAC pottery.

    corded-ware-first-horizon
    Origins of the first Corded Ware horizon (5th millennium BC) after the Khvalynsk-Novodanilovka expansion. Corded Ware (circles) and horse-head scepters (rectangles) and other steppe elements (triangles). Image from Bulatović (2014).

    Economy: Yamna expands from Repin (and Repin from Khvalynsk-Novodanilovka) as a nomadic or semi-nomadic purely pastoralist society (with occasional gathering of wild seeds), which naturally thrives in the grasslands of the Pontic-Caspian, lower Danube and Hungarian steppes. Corded Ware shows agropastoralism (as late Eneolithic forest-steppe and steppe groups of eastern Europe, such as late Trypillian, TRB, and GAC groups), inhabits territories north of the loess line, with heavy reliance of hunter-gathering depending on the specific region.

    Cattle herding: Interestingly, both west Yamna and Corded Ware show more reliance on cattle herding than other pastoralist groups, which – contrasted with the previous Eneolithic herding traditions of the Pontic-Caspian steppe, where sheep-goats predominate – make them look alike. However, the cattle-herding economy of Yamna is essential for its development from late Repin and its expansion through the steppes (over western territories practising more hunter-gathering and sheep-goat herding economy), and it does not reach equally the Volga-Ural region, whose groups keep some of the old subsistence economy (read more about the late Repin expansion). Corded Ware, on the other hand, inherits its economic strategy from east European groups like TRB, GAC, and especially late Trypillian communities, showing a predominance of cattle herding within an agropastoral community in the forest-steppe and forest zones of Volhynia, Podolia, and surrounding forest-steppe and forest regions.

    yamna-scheme
    Scheme of interlinked socio-economic-ideological innovations forming the Yamnaya. Frînculeasa, Preda, and Heyd (2015)

    Horse riding: Horse riding and horse transport is proven in Yamna (and succeeding Bell Beaker and Sintashta), assumed for late Repin (essential for cattle herding in the seas of grasslands that are the steppes, without nearby water sources), quite likely during the Khvalynsk expansion (read more here), and potentially also for Samara, where the predominant horse symbolism of early Khvalynsk starts. Corded Ware – like the north Pontic forest-steppe and forest areas during the Eneolithic – , on the other hand, does not show a strong reliance on horse riding. The high mobility and short-term settlements characteristic of Corded Ware, that are often associated with horse riding by association with Yamna, may or may not be correct, but there is no need for horses to explain their herding economy or their mobility, and the north-eastern European areas – the one which survived after Bell Beaker expansion – did certainly not rely on horses as an essential part of their economy.

    NOTE: I cannot think of more supposed similarities right now. If you have more ideas, please share in the comments and I will add them here.

    Genetic similarities

    EHG: This is the clearest link between both communities. We thought it was related to the expansion of ANE-related ancestry to the west into WHG territory, but now it seems that it will be rather WHG expanding into ANE territory from the Pontic-Caspian region to the east (read more on recent Caucasus Neolithic, on , and on Caucasus HG).

    NOTE. Given how much each paper changes what we know about the Palaeolithic, the origin and expansion of the (always developing) known ancestral components and specific subclades (see below) is not clear at all.

    CHG: This is the key link between both cultures, which will delimit their interaction in terms of time and space. CHG is intermediate between EHG and Iran N (ca. 8000 BC). The ancestry is thus linked to the Caucasus south of the steppe before the emergence of North Pontic (western) and Don-Volga-Ural (eastern) communities during the Mesolithic. The real question is: when we have more samples from the steppe and the Caucasus during the Neolithic, how many CHG groups are we going to find? Will the new specific ancestral components (say CHG1, CHG2, CHG3, etc.) found in Yamna (from Khvalynsk, in the east) and Corded Ware (probably from the North Pontic forest-steppe) be the same? My guess is, most likely not, unless they are mediated by the Khvalynsk-Novodanilovka expansion (read more on CHG in the Caucasus).

    yamnaya-chg-ancestry
    Formation of Yamna and CHG contribution, in Damgaard et al. (Science 2018). A 10-leaf model based on combining the models in Fig. S16 and Fig. S19 and re-estimating the model parameters.

    WHG/EEF: This is the obvious major difference – known today – in the formation of both communities in the steppe, and shows the different contacts that both groups had at least since the Eneolithic, i.e. since the expansion of Repin with its renewed Y-DNA bottleneck, and probably since before the early Khvalynsk expansion (read more on Yamna-Corded Ware differences contrasting with Yamna-Afanasevo, Yamna-Bell Beaker, and Yamna-Sintashta similarities).

    NOTE 1. Some similarities between groups can be seen depending on the sampled region; e.g. Baltic groups show more similarities with southern Pontic-Caspian steppe populations, probably due to exogamy.

    yamna-corded-ware-diff-qpgraph
    Tested qpGraph model in Tambets et al. (2018). The qpGraph model fitting the data for the tested populations. “Colour codes for the terminal nodes: pink—modern populations (‘Population X’ refers to test population) and yellow—ancient populations (aDNA samples and their pools). Nodes coloured other than pink or yellow are hypothetical intermediate populations. We putatively named nodes which we used as admixture sources using the main recipient among known populations. The colours of intermediate nodes on the qpGraph model match those on the admixture proportions panel.”

    NOTE 2. We have this information on the differences in “steppe ancestry” between Yamna and Corded Ware, compared to previous studies, because now we have more samples of neighbouring, roughly contemporaneous Eneolithic groups, to analyse the real admixture processes. This kind of fine scale studies is what is going to show more and more differences between Khvalynsk-Yamna and Sredni Stog-Corded Ware as more data pours in. The evolution of both communities in archaeology and in PCA (see below) is probably witness to those differences yet to be published.

    R1: Even though some people try very hard to think in terms of “R1” vs. (Caucasus) J or G or any other upper clade, this is plainly wrong. It is possible, given what we know now, that Q1a2-M242 expanded ANE ancestry to the west ca. 13000 BC, while R1b-P279 expanded WHG ancestry to the east with the expansion of post-Swiderian cultures, creating EHG as a WHG:ANE cline. The role of R1a-M459 is unknown, but it might be related to any of these migrations, or others (plural) along northern Eurasia (read more on the expansion of R1b-P279, on Palaeolithic Q1a2, and on R1a-M417).

    NOTE. I am inclined to believe in a speculative Mesolithic-Early Neolithic community involving Eurasiatic movements accross North Eurasia, and Indo-Uralic movements in its western part, with the last intense early Uralic-PIE contacts represented by the forming west (Mariupol culture) and east (Don-Volga-Ural cultures, including Samara) communities developing side by side. Before their known Eneolithic expansions, no large-scale Y-DNA bottleneck is going to be seen in the Pontic-Caspian steppe, with different (especially R1a and R1b subclades) mixed among them, as shown in North Pontic Neolithic, Samara HG, and Khvalynsk samples.

    PCA-trypillia-greece-neolithic-outlier-anatolian
    Image modified from Wang et al. (2018). Samples projected in PCA of 84 modern-day West Eurasian populations (open symbols). Previously known clusters have been marked and referenced. Marked and labelled are the Balkan samples referenced in this text An EHG and a Caucasus ‘clouds’ have been drawn, leaving Pontic-Caspian steppe and derived groups between them. See the original file here.

    Corded Ware and ‘steppe ancestry’

    If we take a look at the evolution of Corded Ware cultures, the expansion of Bell Beakers – dominated over most previous European cultures from west to east Europe – influenced the development of the whole European Bronze Age, up to Mierzanowice and Trzciniec in the east.

    The only relevant unscathed CWC-derived groups, after the expansion of Sintashta-Potapovka as the Srubna-Andronovo horizon in the Eurasian steppes, were those of the north-eastern European forest zone: between Belarus to the west, Finland to the north, the Urals to the east, and the forest-steppe region to the south. That is, precisely the region supposed to represent Uralic speakers during the Bronze Age.

    This inconsistency of steppe ancestry and its relation with Uralic (and Balto-Slavic) peoples was observed shortly after the publication of the first famous 2015 papers by Paul Heggarty, of the Max-Planck Institute for Evolutionary Anthropology (read more):

    Haak et al. (2015) make much of the high Yamnaya ancestry scores for (only some!) Indo-European languages. What they do not mention is that those same results also include speakers of other languages among those with the highest of all scores for Yamnaya ancestry. Only these are languages of the Uralic family, not Indo-European at all; and their Yamnaya-ancestry signals are far higher than in many branches of Indo-European in (southern) Europe. Estonian ranks very high, while speakers of the very closely related Finnish are curiously not shown, and nor are the Saami. Hungarian is relevant less directly since this language arrived only c. 900 AD, but also high.

    uralic-steppe-ancestry

    These data imply that Uralic-speakers too would have been part of the Yamnaya > Corded Ware movement, which was thus not exclusively Indo-European in any case. And as well as the genetics, the geography, chronology and language contact evidence also all fit with a Yamnaya > Corded Ware movement including Uralic as well as Balto-Slavic.

    Both papers fail to address properly the question of the Uralic languages. And this despite — or because? — the only Uralic speakers they report rank so high among modern populations with Yamnaya ancestry. Their linguistic ancestors also have a good claim to have been involved in the Corded Ware and Yamnaya cultures, and of course the other members of the Uralic family are scattered across European Russia up to the Urals.

    NOTE. Although the author was trying to support the Anatolian hypothesis – proper of glottochronological studies often published from the Max Planck Institute – , the question remains equally valid: “if Proto-Indo-European expands with Corded Ware and steppe ancestry, what is happening with Uralic peoples?”

    For my part, I claimed in my draft that ancestral components were not the only relevant data to take into account, and that Y-DNA haplogroups R1a and R1b (appearing separately in CWC and Yamna-Bell Beaker-Afanasevo), together with their calculated timeframes of formation – and therefore likely expansion – did not fit with the archaeological and linguistic description of the spread of Proto-Indo-European and its dialects.

    In fact, it seemed that only one haplogroup (R1b-M269) was constantly and consistenly associated with the proposed routes of Late PIE dialectal expansions – like Anthony’s second (Afanasevo) and third (Lower Danube, Balkan) waves. What genetics shows fits seamlessly with Mallory’s association of the North-West Indo-European expansion with Bell Beakers (read here how archaeologists were right).

    balanovksy-yamnaya-ancestry
    Map of the much beloved steppe (or “Yamnaya”) ancestry in modern populations, by Balanovsky. Modified from Klejn (2017).

    More precise inconsistencies were observed after the publication of Olalde et al. (2017) and Mathieson et al. (2017), by Volker Heyd in Kossinna’s smile (2017). Letting aside the many details enumerated (you can read a summary in my latest draft), this interesting excerpt is from the conclusion:

    NOTE. An open access ealier draft version of the paper is offered for download by the author.

    Simple solutions to complex problems are never the best choice, even when favoured by politicians and the media. Kossinna also offered a simple solution to a complex prehistoric problem, and failed therein. Prehistoric archaeology has been aware of this for a century, and has responded by becoming more differentiated and nuanced, working anthropologically, scientifically and across disciplines (cf. Müller 2013; Kristiansen 2014), and rejecting monocausal explanations. The two aDNA papers in Nature, powerful and promising as they are for our future understanding, also offer rather straightforward messages, heavily pulled by culture-history and the equation of people with culture. This admittedly is due partly to the restrictions of the medium that conveys them (and despite the often relevant additional detail given as supplementary information, which is unfortunately not always given full consideration).

    While I have no doubt that both papers are essentially right, they do not reflect the complexity of the past. It is here that archaeology and archaeologists contributing to aDNA studies find their role; rather than simply handing over samples and advising on chronology, and instead of letting the geneticists determine the agenda and set the messages, we should teach them about complexity in past human actions and interactions. If accepted, this could be the beginning of a marriage made in heaven, with the blessing smile of Gustaf Kossinna, and no doubt Vere Gordon Childe, were they still alive, in a reconciliation of twentieth- and twenty-first-century approaches. For us as archaeologists, it could also be the starting point for the next level of a new archaeology.

    heyd-yamnaya-expansion
    Main distribution of Yamnaya kurgans in the Pontic-Caspian steppe of modern day Russia, Ukraine, and Kazakhstan, and its western branch in modern south-east European countries of Romania, Bulgaria, Serbia, and Hungary, with numbers of excavated kurgans and graves given. Picture: Volker Heyd (2018).

    The question was made painfully clear with the publication of Olalde et al. (2018) & Mathieson et al. (2018), where the real route of Yamna expansion into Europe was now clearly set through the steppes into the Carpathian basin, later expanded as Bell Beakers.

    This has been further confirmed in more recent papers, such as Narasimhan et al. (2018), Damgaard et al. (2018), or Wang et al. (2018), among others.

    However, the discussion is still dominated by political agendas based on prevalent Y-DNA haplogroups in modern countries and ethnic groups.

    Related

    Evolution of Steppe, Neolithic, and Siberian ancestry in Eurasia (ISBA 8, 19th Sep)

    jena-isba8

    Some information is already available from ISBA 8 (see programme in PDF), thanks to the tweets from Alexander M. Kim.

    Official abstracts are listed first (emphasis mine), then reports and images with link to Kim’s tweets. Here is the list for quick access:

    Updates (17:00 CET):

    Turkic and Hunnic expansions

    Tracing the origin and expansion of the Turkic and Hunnic confederations, by Flegontov et al.

    Turkic-speaking populations, now spread over a vast area in Asia, are highly heterogeneous genetically. The first confederation unequivocally attributed to them was established by the Göktürks in the 6th c. CE. Notwithstanding written resources from neighboring sedentary societies such as Chinese, Persian, Indian and Eastern Roman, earlier history of the Turkic speakers remains debatable, including their potential connections to the Xiongnu and Huns, which dominated the Eurasian steppe in the first half of the 1st millennium CE. To answer these questions, we co-analyzed newly generated human genome-wide data from Central Asia (the 1240K panel), spanning the period from ca. 3000 to 500 YBP, and the data published by de Barros Damgaard et al. (137 ancient human genomes from across the Eurasian steppes, Nature, 2018). Firstly, we generated a PCA projection to understand genetic affinities of ancient individuals with respect to present-day Tungusic, Mongolic, Turkic, Uralic, and Yeniseian-speaking groups. Secondly, we modeled hundreds of present-day and few ancient Turkic individuals using the qpAdm tool, testing various modern/ancient Siberian and ancient West Eurasian proxies for ancestry sources.

    A majority of Turkic speakers in Central Asia, Siberia and further to the west share the same ancestry profile, being a mixture of Tungusic or Mongolic speakers and genetically West Eurasian populations of Central Asia in the early 1st millennium CE. The latter are themselves modelled as a mixture of Iron Age nomads (western Scythians or Sarmatians) and ancient Caucasians or Iranian farmers. For some Turkic groups in the Urals and the Altai regions and in the Volga basin, a different admixture model fits the data: the same West Eurasian source + Uralic- or Yeniseian-speaking Siberians. Thus, we have revealed an admixture cline between Scythians and the Iranian farmer genetic cluster, and two further clines connecting the former cline to distinct ancestry sources in Siberia. Interestingly, few Wusun-period individuals harbor substantial Uralic/Yeniseian-related Siberian ancestry, in contrast to preceding Scythians and later Turkic groups characterized by the Tungusic/Mongolic-related ancestry. It remains to be elucidated whether this genetic influx reflects contacts with the Xiongnu confederacy. We are currently assembling a collection of samples across the Eurasian steppe for a detailed genetic investigation of the Hunnic confederacies.

    jeong-population-clines
    Three distinct East/West Eurasian clines across the continent with some interesting linguistic correlates, as earlier reported by Jeong et al. (2018). Alexander M. Kim.
    siberian-genetic-component-chronology
    Very important observation with implication of population turnover is that pre-Turkic Inner Eurasian populations’ Siberian ancestry appears predominantly “Uralic-Yeniseian” in contrast to later dominance of “Tungusic-Mongolic” sort (which does sporadically occur earlier). Alexander M. Kim

    New interesting information on the gradual arrival of the “Uralic-Yeniseian” (Siberian) ancestry in eastern Europe with Iranian and Turkic-speaking peoples. We already knew that Siberian ancestry shows no original relationship with Uralic-speaking peoples, so to keep finding groups who expanded this ancestry eastwards in North Eurasia should be no surprise for anyone at this point.

    Central Asia and Indo-Iranian

    The session The Genomic Formation of South and Central Asia, by David Reich, on the recent paper by Narasimhan et al. (2018).

    bmac-reich
    One important upside of dense genomic sampling at single localities – greater visibility of outliers and better constraints on particular incoming ancestries’ arrival times. Gonur Tepe as a great case study of this. Alexander M. Kim
    ani-asi-steppe-cline
    – Tale of three clines, with clear indication that “Indus Periphery” samples drawn from an already-cosmopolitan and heterogeneous world of variable ASI & Iranian ancestry. (I know how some people like to pore over these pictures – so note red dots = just dummy data for illustration.)
    – Some more certainty about primary window of steppe ancestry injection into S. Asia: 2000-1500 BC
    Alexander M. Kim

    British Isles

    Ancient DNA and the peopling of the British Isles – pattern and process of the Neolithic transition, by Brace et al.

    Over recent years, DNA projects on ancient humans have flourished and large genomic-scale datasets have been generated from across the globe. Here, the focus will be on the British Isles and applying aDNA to address the relative roles of migration, admixture and acculturation, with a specific focus on the transition from a Mesolithic hunter-gatherer society to the Neolithic and farming. Neolithic cultures first appear in Britain ca. 6000 years ago (kBP), a millennium after they appear in adjacent areas of northwestern continental Europe. However, in Britain, at the margins of the expansion the pattern and process of the British Neolithic transition remains unclear. To examine this we present genome-wide data from British Mesolithic and Neolithic individuals spanning the Neolithic transition. These data indicate population continuity through the British Mesolithic but discontinuity after the Neolithic transition, c.6000 BP. These results provide overwhelming support for agriculture being introduced to Britain primarily by incoming continental farmers, with surprisingly little evidence for local admixture. We find genetic affinity between British and Iberian Neolithic populations indicating that British Neolithic people derived much of their ancestry from Anatolian farmers who originally followed the Mediterranean route of dispersal and likely entered Britain from northwestern mainland Europe.

    british-isles
    Millennium of lag between farming establishment in NW mainland Europe & British Isles. Only 25 Mesolithic human finds from Britain. Alexander M. Kim.
    british-admixture
    – Evidently no resurgence of hunter-gatherer ancestry across Neolithic
    – Argument for at least two geographically distinct entries of Neolithic farmers
    Alexander M. Kim.

    MN Atlantic / Megalithic cultures

    Genomics of Middle Neolithic farmers at the fringe of Europe, by Sánchez Quinto et al.

    Agriculture emerged in the Fertile Crescent around 11,000 years before present (BP) and then spread, reaching central Europe some 7,500 years ago (ya.) and eventually Scandinavia by 6,000 ya. Recent paleogenomic studies have shown that the spread of agriculture from the Fertile Crescent into Europe was due mainly to a demic process. Such event reshaped the genetic makeup of European populations since incoming farmers displaced and admixed with local hunter-gatherers. The Middle Neolithic period in Europe is characterized by such interaction, and this is a time where a resurgence of hunter-gatherer ancestry has been documented. While most research has been focused on the genetic origin and admixture dynamics with hunter-gatherers of farmers from Central Europe, the Iberian Peninsula, and Anatolia, data from farmers at the North-Western edges of Europe remains scarce. Here, we investigate genetic data from the Middle Neolithic from Ireland, Scotland, and Scandinavia and compare it to genomic data from hunter-gatherers, Early and Middle Neolithic farmers across Europe. We note affinities between the British Isles and Iberia, confirming previous reports. However, we add on to this subject by suggesting a regional origin for the Iberian farmers that putatively migrated to the British Isles. Moreover, we note some indications of particular interactions between Middle Neolithic Farmers of the British Isles and Scandinavia. Finally, our data together with that of previous publications allow us to achieve a better understanding of the interactions between farmers and hunter-gatherers at the northwestern fringe of Europe.

    megalithic-europe
    -Novel genomic data from 21 individuals from 6 sites.
    – “Megalithic” individuals not systematically diff. from geographically proximate “non-megalithic” burials
    – Mild evidence for over-representation of males in some British Isles megalithic tombs
    – Megalithic tombs in W & N Neolithic Europe may have link to kindred structures
    Alexander M. Kim

    Central European Bronze Age

    Ancient genomes from the Lech Valley, Bavaria, suggest socially stratified households in the European Bronze Age, by Mittnik et al.

    Archaeogenetic research has so far focused on supra-regional and long-term genetic developments in Central Europe, especially during the third millennium BC. However, detailed high-resolution studies of population dynamics in a microregional context can provide valuable insights into the social structure of prehistoric societies and the modes of cultural transition.

    Here, we present the genomic analysis of 102 individuals from the Lech valley in southern Bavaria, Germany, which offers ideal conditions for such a study. Several burial sites containing rich archaeological material were directly dated to the second half of the 3rd and first half of the 2nd millennium BCE and were associated with the Final Neolithic Bell Beaker Complex and the Early and Middle Bronze Age. Strontium isotope data show that the inhabitants followed a strictly patrilocal residential system. We demonstrate the impact of the population movement that originated in the Pontic-Caspian steppe in the 3rd millennium BCE and subsequent local developments. Utilising relatedness inference methods developed for low-coverage modern DNA we reconstruct farmstead related pedigrees and find a strong association between relatedness and grave goods suggesting that social status is passed down within families. The co-presence of biologically related and unrelated individuals in every farmstead implies a socially stratified complex household in the Central European Bronze Age.

    lech-bavaria
    Diminishing steppe ancestry and resurgent Neolithic ancestry over time. Alexander M. Kim

    Notice how the arrival of Bell Beakers, obviously derived from Yamna settlers in Hungary, and thus clearly identified as expanding North-West Indo-Europeans all over Europe, marks a decrease in steppe ancestry compared to Corded Ware groups, in a site quite close to the most likely East BBC homeland. Copenhagen’s steppe ancestry = Indo-European going down the toilet, step by step…

    UPDATES

    Russian Far East populations

    Gene geography of the Russian Far East populations – faces, genome-wide profiles, and Y-chromosomes, by Balanovsky et al.

    Russian Far East is not only a remote area of Eurasia but also a link of the chain of Pacific coast regions, spanning from East Asia to Americas, and many prehistoric migrations are known along this chain. The Russian Far East is populated by numerous indigenous groups, speaking Tungusic, Turkic, Chukotko-Kamchatka, Eskimo-Aleut, and isolated languages. This linguistic and geographic variation opens question about the patterns of genetic variation in the region, which was significantly undersampled and received minor attention in the genetic literature to date. To fill in this gap we sampled Aleuts, Evenks, Evens, Itelmens, Kamchadals, Koryaks, Nanais, Negidals, Nivkhs, Orochi, Udegeis, Ulchi, and Yakuts. We also collected the demographic information of local populations, took physical anthropological photos, and measured the skin color. The photos resulted in the “synthetic portraits” of many studied groups, visualizing the main features of their faces.

    north-eurasia

    far-east-pca
    Impressive North Eurasian biobank including 30,500 individual samples with broad consent, some genealogical info, phenotypic data. Alexander M. Kim

    Finland AD 5th-8th c.

    Sadly, no information will be shared on the session A 1400-year transect of ancient DNA reveals recent genetic changes in the Finnish population, by Salmela et al. We will have to stick to the abstract:

    Objectives: Our objective was to use aDNA to study the population history of Finland. For this aim, we sampled and sequenced 35 individuals from ten archaeological sites across southern Finland, representing a time transect from 5th to 18th century.

    Methods: Following genomic DNA extraction and preparation of indexed libraries, the samples were enriched for 1,2 million genomewide SNPs using in-solution capture and sequenced on an Illumina HighSeq 4000 instrument. The sequence data were then compared to other ancient populations as well as modern Finns, their geographical neighbors and worldwide populations. Authenticity testing of the data as well as population history inference were based on standard computational methods for aDNA, such as principal component analysis and F statistics.

    Results: Despite the relatively limited temporal depth of our sample set, we are able to see major genetic changes in the area, from the earliest sampled individuals – who closely resemble the present-day Saami population residing markedly further north – to the more recent ancient individuals who show increased affinity to the neighboring Circum-Baltic populations. Furthermore, the transition to the present-day population seems to involve yet another perturbation of the gene pool.

    So, most likely then, in my opinion – although possibly Y-DNA will not be reported – Finns were in the Classical Antiquity period mostly R1a with secondary N1c in the Circum-Baltic region (similar to modern Estonians, as I wrote recently), while Saami were probably mostly a mix of R1a-Z282 and I1 in southern Finland. That’s what the first transition after the 5th c. probably reflects, the spread of Finns (with mainly N1c lineages) to the north, while the more recent transition shows probably the introduction of North Germanic ancestry (and thus also R1b-U106, R1a-Z284, and I1 lineages) in the west.

    Dairying in ancient Mongolia

    The History of Dairying in ancient Mongolia, by Wilkin et al.

    The use of mass spectrometry based proteomics presents a novel method for investigating human dietary intake and subsistence strategies from archaeological materials. Studies of ancient proteins extracted from dental calculus, as well as other archaeological material, have robustly identified both animal and plant-based dietary components. Here we present a recent case study using shotgun proteomics to explore the range and diversity of dairying in the ancient eastern Eurasian steppe. Contemporary and prehistoric Mongolian populations are highly mobile and the ephemerality of temporarily occupied sites, combined with the severe wind deflation common across the steppes, means detecting evidence of subsistence can be challenging. To examine the time depth and geographic range of dairy use in Mongolia, proteins were extracted from ancient dental calculus from 32 individuals spanning burial sites across the country between the Neolithic and Mongol Empire. Our results provide direct evidence of early ruminant milk consumption across multiple time periods, as well as a dramatic increase in the consumption of horse milk in the late Bronze Age. These data provide evidence that dairy foods from multiple species were a key part of subsistence strategies in prehistoric Mongolia and add to our understanding of the importance of early pastoralism across the steppe.

    The confirmation of the date 3000-2700 BC for dairying in the eastern steppe further supports what was already known thanks to archaeological remains, that the pastoralist subsistence economy was brought for the first time to the Altai region by expanding late Khvalynsk/Repin – Early Yamna pastoralists that gave rise to the Afanasevo culture.

    Neolithic transition in Northeast Asia

    Genomic insight into the Neolithic transition peopling of Northeast Asia, by C. Ning

    East Asian representing a large geographic region where around one fifth of the world populations live, has been an interesting place for population genetic studies. In contrast to Western Eurasia, East Asia has so far received little attention despite agriculture here evolved differently from elsewhere around the globe. To date, only very limited genomic studies from East Asia had been published, the genetic history of East Asia is still largely unknown. In this study, we shotgun sequenced six hunter-gatherer individuals from Houtaomuga site in Jilin, Northeast China, dated from 12000 to 2300 BP and, 3 farming individuals from Banlashan site in Liaoning, Northeast China, dated around 5300 BP. We find a high level of genetic continuity within northeast Asia Amur River Basin as far back to 12000 BP, a region where populations are speaking Tungusic languages. We also find our Compared with Houtaomuga hunter-gatherers, the Neolithic farming population harbors a larger proportion of ancestry from Houtaomuga related hunter-gathers as well as genetic ancestry from central or perhaps southern China. Our finding further suggests that the introduction of farming technology into Northeast Asia was probably introduced through demic diffusion.

    A detail of the reported haplogroups of the Houtaomuga site:

    houtaomuga-site-y-dna-mtdna

    Y-DNA in Northeast Asia shows thus haplogroup N1b1 ~5000 BC, probably representative of the Baikal region, with a change to C2b-448del lineages before the Xiongnu period, which were later expanded by Mongols.

    A study of genetic diversity of three isolated populations in Xinjiang using Y-SNP

    indo-european-indo-iranian-migrations

    New open access paper (in Chinese) A study of genetic diversity of three isolated populations in Xinjiang using Y-SNP, by liu et al. Acta Anthropologica Sinitica (2018)

    Abstract:

    The Keriyan, Lopnur and Dolan peoples are isolated populations with sparse numbers living in the western border desert of our country. By sequencing and typing the complete Y-chromosome of 179 individuals in these three isolated populations, all mutations and SNPs in the Y-chromosome and their corresponding haplotypes were obtained. Types and frequencies of each haplotype were analyzed to investigate genetic diversity and genetic structure in the three isolated populations. The results showed that 12 haplogroups were detected in the Keriyan with high frequencies of the J2a1b1 (25.64%), R1a1a1b2a (20.51%), R2a (17.95%) and R1a1a1b2a2 (15.38%) groups. Sixteen haplogroups were noted in the Lopnur with the following frequencies: J2a1 (43.75%), J2a2 (14.06%), R2 (9.38%) and L1c (7.81%). Forty haplogroups were found in the Dolan, noting the following frequencies: R1b1a1a1 (9.21%), R1a1a1b2a1a (7.89%), R1a1a1b2a2b (6.58%) and C3c1 (6.58%). These data show that these three isolated populations have a closer genetic relationship with the Uygur, Mongolian and Sala peoples. In particular, there are no significant differences in haplotype and frequency between the three isolated populations and Uygur (f=0.833, p=0.367). In addition, the genetic haplotypes and frequencies in the three isolated populations showed marked Eurasian mixing illustrating typical characteristics of Central Asian populations.

    population-distribution-map
    Figure 1. The populations distribution map. Left: Uluru. Center: Dali Yabuyi. Right: Kaerqu.

    My knowledge of written Chinese is almost zero, so here are some excerpts with the help of Google Translate:

    The source of 179 blood samples used in the study is shown in Figure 1. The Keriyan blood samples were collected from Dali Yabuyi Township, Yutian County (39 samples). The blood samples of the Lopnur people were collected from Kaerqu Township, Yuli County (64 cases); the blood samples of the Dolan people were collected from the town of Uluru, Awati County (76).

    haplotype-frequency-uighur
    Columns one and two are the Keriyan haplotypes and frequencies, respectively; the third and fourth columns are the Lopnur haplotypes and frequencies; the last four columns are the Daolang haplotypes and frequencies.

    The composition and frequency of the Keriyan people’s haplogroup are closest to those of the Uighurs, and both Principal Component Analysis and Phylogenetic Tree Analysis show that their kinship is recent. We initially infer that the Keriyan are local desert indigenous people. They have a connection with the source of the Uighurs. Chen et al. [42] studied the patriarchal and maternal genetic analysis of the Keriyan people and found that they are not descendants of the Tibetan ethnic group in the West. The Keriyan people are a mixed group of Eastern and Western Europeans, which may originate from the local Vil group. Duan Ranhui [43] and other studies have shown that the nucleotide variability and average nucleotide differences in the Keriyan population are between the reported Eastern and Western populations. The phylogenetic tree also shows that the populations in Central Asia are between the continental lineage of the eastern population and the European lineage of the western population, and the genetic distance between the Keriyan and the Uighurs is the closest, indicating that they have a close relationship.

    y-chromosome-pca

    Regarding the origin of the Lopnur people, Purzhevski judged that it was a mixture of Mongolians and Aryans according to the physical characteristics of the Lopnur people. In 1934, the Sino-Swiss delegation discovered the famous burials of the ancient tombs in the Peacock River. After research, they were the indigenous people before the Loulan period; the researcher Yang Lan, a researcher at the Institute of Cultural Relics of the Chinese Academy of Social Sciences, said that the Lopnur people were descendants of the ancient “Landan survivors”. However, the Loulan people speaking an Indo-European language, and the Lopnur people speaking Uyghur languages contradict this; the historical materials of the Western Regions, “The Geography of the Western Regions” and “The Western Regions of the Ming Dynasty” record the Uighurs who lived in Cao Cao in the late 17th and early 18th centuries. Because of the occupation of the land by the Junggar nobles and their oppression, they fled. Some of them were forced to move to the Lop Nur area. There are many similar archaeological discoveries and historical records. We have no way to determine their accuracy, but they are at different times, and there is a great difference in what is heard in the same region. (…) The genetic characteristics of modern Lopnur people are the result of the long-term ethnic integration of Uyghurs, Mongols, and Europeans. This is also consistent with the similarity of the genetic structure of the Y chromosome of Lopnur in this study with the Uighurs and Mongolians. For example, the frequency of J haplogroup is as high as 59.37%, while J and its downstream sub-haplogroup are mainly distributed in western Europe, West Asia and Central Asia; the frequency of O, R haplogroup is close to that of Mongolians.

    y-chromosome-frequency
    1) KA: Keriya, LB: Rob, DL: Daolang, HTW: Hetian Uygur, HTWZ: and Uygur, TLFW: Turpan Uighur, HZ: Hui, HSKZ: Kazakh, WZBKZ: Wuhuan Others, TJKZ: Tajik, KEKZZ: Kirgiz, TTEZ: Tatar, ELSZ: Russian XBZ: Xibo, MGZ: Mongolian, SLZ: Salar, XJH: Xinjiang Han, GSH: Gansu Han, GDH: Guangdong Han SCH: Sichuan Han. 2) Reference population data source literature 19-22. After the population names in the table have been marked, all the shorthands in the text are referred to in this table. 3) Because the degree of haplotypes of each reference population is different to each sub-group branch, the sub-group branches under the same haplogroup are merged when the population haplogroup data is aggregated, for example: for haplogroup G Some people are divided into G1a and G2a levels, others are assigned to G1, G2, and G3, while some people can only determine G this time. Therefore, each subgroup is merged into a single group G.

    According to Ming History·Western Biography, the Mongolians originated from the Mobei Plateau and later ruled Asia and Eastern Europe. Mongolia was established, and large areas of southern Xinjiang and Central Asia were included. Later, due to the Mongolian king’s struggle for power, it fell into a long-term conflict. People of the land fled to avoid the war, and the uninhabited plain of the lower reaches of the Yarkant River naturally became a good place to live. People from all over the world gathered together and called themselves “Dura” and changed to “Dang Lang”. The long-term local Uyghur exchanges that entered the southern Mongolian monks and “Dura” were gradually assimilated [44]. According to the report, locals wore Mongolian clothes, especially women who still maintained a Mongolian face [45]. In 1976, the robes and waistbands found in the ancient time of the Daolang people in Awati County were very similar to those of the ancients. Dalang Muqam is an important part of Daolang culture. It is also a part of the Uyghur Twelve Muqam, and it retains the ancient Western culture, but it also contains a larger Mongolian culture and relics. The above historical records show that the Daolang people should appear in the Chagatai Khanate and be formed by the integration of Mongolian and Uighur ethnic groups. Through our research, we also found that the paternal haplotype of the Daolang people is contained in both Uygur and Mongolian, and the main haplogroups are the same, whereas the frequencies are different (see Table 3). The principal component analysis and the NJ analysis are also the same. It is very close to the Uyghur and the Mongolian people, which establishes new evidence for the “mixed theory” in molecular genetics.

    main-haplogroup-uighur
    Genetic relationship between the three isolated populations: the Uygur and the Mongolian is the closest, and the main haplogroup can more intuitively compare the source composition of the genetic structure of each population. Haplogroups C, D, and O are mainly distributed in Asia as the East Asian characteristic haplogroup; haplogroups G, J, and R are mainly distributed in continental Europe, and the high frequency distribution is in Europe and Central Asia.

    If the nomenclature follows a recent ISOGG standard, it appears that:

    The presence of exclusively R1a-Z93 subclades and the lack of R1b-M269 samples is compatible with the expansion of R1a-Z93 into the area with Proto-Tocharians, at the turn of the 3rd-2nd millennium BC, as suggested by the Xiaohe samples, supposedly R1a(xZ93).

    Now that it is obvious from ancient DNA (as it was clear from linguistics) that Pre-Tocharians separated earlier than other Late PIE peoples, with the expansion of late Khvalynsk/Repin into the Altai, at the end of the 4th millennium, these prevalent R1a (probably Z93) samples may be showing a replacement of Pre-Tocharian Y-DNA with the Andronovo expansion already by 2000 BC.

    Lacking proper assessment of ancient DNA from Proto-Tocharians, this potential early Y-DNA replacement is still speculative*. However, if that is the case, I wonder what the Copenhagen group will say when supporting this, but rejecting at the same time the more obvious Y-DNA replacement in East Yamna / Poltavka in the mid-3rd millennium with incoming Corded Ware-related peoples. I guess the invention of an Indo-Tocharian group may be near…

    *NOTE. The presence of R1b-M269 among Proto-Tocharians, as well as the presence of R1b-M269 among Tarim Basin peoples in modern and ancient times is not yet fully discarded. The prevalence of R1a-Z93 may also be the sign of a more recent replacement by Iranian peoples, before the Mongolian and Turkic expansions that probably brought R1b(xM269).

    Also, the presence of R1b (xM269) samples in east Asia strengthens the hypothesis of a back-migration of R1b-P297 subclades, from Northern Europe to the east, into the Lake Baikal area, during the Early Mesolithic, as found in the Botai samples and later also in Turkic populations – which are the most likely source of these subclades (and probably also of Q1a2 and N1c) in the region.

    Related

    Common pitfalls in human genomics and bioinformatics: ADMIXTURE, PCA, and the ‘Yamnaya’ ancestral component

    invasion-from-the-steppe-yamnaya

    Good timing for the publication of two interesting papers, that a lot of people should read very carefully:

    ADMIXTURE

    Open access A tutorial on how not to over-interpret STRUCTURE and ADMIXTURE bar plots, by Daniel J. Lawson, Lucy van Dorp & Daniel Falush, Nature Communications (2018).

    Interesting excerpts (emphasis mine):

    Experienced researchers, particularly those interested in population structure and historical inference, typically present STRUCTURE results alongside other methods that make different modelling assumptions. These include TreeMix, ADMIXTUREGRAPH, fineSTRUCTURE, GLOBETROTTER, f3 and D statistics, amongst many others. These models can be used both to probe whether assumptions of the model are likely to hold and to validate specific features of the results. Each also comes with its own pitfalls and difficulties of interpretation. It is not obvious that any single approach represents a direct replacement as a data summary tool. Here we build more directly on the results of STRUCTURE/ADMIXTURE by developing a new approach, badMIXTURE, to examine which features of the data are poorly fit by the model. Rather than intending to replace more specific or sophisticated analyses, we hope to encourage their use by making the limitations of the initial analysis clearer.

    The default interpretation protocol

    Most researchers are cautious but literal in their interpretation of STRUCTURE and ADMIXTURE results, as caricatured in Fig. 1, as it is difficult to interpret the results at all without making several of these assumptions. Here we use simulated and real data to illustrate how following this protocol can lead to inference of false histories, and how badMIXTURE can be used to examine model fit and avoid common pitfalls.

    admixture-protocol
    A protocol for interpreting admixture estimates, based on the assumption that the model underlying the inference is correct. If these assumptions are not validated, there is substantial danger of over-interpretation. The “Core protocol” describes the assumptions that are made by the admixture model itself (Protocol 1, 3, 4), and inference for estimating K (Protocol 2). The “Algorithm input” protocol describes choices that can further bias results, while the “Interpretation” protocol describes assumptions that can be made in interpreting the output that are not directly supported by model inference

    Discussion

    STRUCTURE and ADMIXTURE are popular because they give the user a broad-brush view of variation in genetic data, while allowing the possibility of zooming down on details about specific individuals or labelled groups. Unfortunately it is rarely the case that sampled data follows a simple history comprising a differentiation phase followed by a mixture phase, as assumed in an ADMIXTURE model and highlighted by case study 1. Naïve inferences based on this model (the Protocol of Fig. 1) can be misleading if sampling strategy or the inferred value of the number of populations K is inappropriate, or if recent bottlenecks or unobserved ancient structure appear in the data. It is therefore useful when interpreting the results obtained from real data to think of STRUCTURE and ADMIXTURE as algorithms that parsimoniously explain variation between individuals rather than as parametric models of divergence and admixture.

    For example, if admixture events or genetic drift affect all members of the sample equally, then there is no variation between individuals for the model to explain. Non-African humans have a few percent Neanderthal ancestry, but this is invisible to STRUCTURE or ADMIXTURE since it does not result in differences in ancestry profiles between individuals. The same reasoning helps to explain why for most data sets—even in species such as humans where mixing is commonplace—each of the K populations is inferred by STRUCTURE/ADMIXTURE to have non-admixed representatives in the sample. If every individual in a group is in fact admixed, then (with some exceptions) the model simply shifts the allele frequencies of the inferred ancestral population to reflect the fraction of admixture that is shared by all individuals.

    Several methods have been developed to estimate K, but for real data, the assumption that there is a true value is always incorrect; the question rather being whether the model is a good enough approximation to be practically useful. First, there may be close relatives in the sample which violates model assumptions. Second, there might be “isolation by distance”, meaning that there are no discrete populations at all. Third, population structure may be hierarchical, with subtle subdivisions nested within diverged groups. This kind of structure can be hard for the algorithms to detect and can lead to underestimation of K. Fourth, population structure may be fluid between historical epochs, with multiple events and structures leaving signals in the data. Many users examine the results of multiple K simultaneously but this makes interpretation more complex, especially because it makes it easier for users to find support for preconceptions about the data somewhere in the results.

    In practice, the best that can be expected is that the algorithms choose the smallest number of ancestral populations that can explain the most salient variation in the data. Unless the demographic history of the sample is particularly simple, the value of K inferred according to any statistically sensible criterion is likely to be smaller than the number of distinct drift events that have practically impacted the sample. The algorithm uses variation in admixture proportions between individuals to approximately mimic the effect of more than K distinct drift events without estimating ancestral populations corresponding to each one. In other words, an admixture model is almost always “wrong” (Assumption 2 of the Core protocol, Fig. 1) and should not be interpreted without examining whether this lack of fit matters for a given question.

    admixture-pitfalls
    Three scenarios that give indistinguishable ADMIXTURE results. a Simplified schematic of each simulation scenario. b Inferred ADMIXTURE plots at K= 11. c CHROMOPAINTER inferred painting palettes.

    Because STRUCTURE/ADMIXTURE accounts for the most salient variation, results are greatly affected by sample size in common with other methods. Specifically, groups that contain fewer samples or have undergone little population-specific drift of their own are likely to be fit as mixes of multiple drifted groups, rather than assigned to their own ancestral population. Indeed, if an ancient sample is put into a data set of modern individuals, the ancient sample is typically represented as an admixture of the modern populations (e.g., ref. 28,29), which can happen even if the individual sample is older than the split date of the modern populations and thus cannot be admixed.

    This paper was already available as a preprint in bioRxiv (first published in 2016) and it is incredible that it needed to wait all this time to be published. I found it weird how reviewers focused on the “tone” of the paper. I think it is great to see files from the peer review process published, but we need to know who these reviewers were, to understand their whiny remarks… A lot of geneticists out there need to develop a thick skin, or else we are going to see more and more delays based on a perceived incorrect tone towards the field, which seems a rather subjective reason to force researchers to correct a paper.

    PCA of SNP data

    Open access Effective principal components analysis of SNP data, by Gauch, Qian, Piepho, Zhou, & Chen, bioRxiv (2018).

    Interesting excerpts:

    A potential hindrance to our advice to upgrade from PCA graphs to PCA biplots is that the SNPs are often so numerous that they would obscure the Items if both were graphed together. One way to reduce clutter, which is used in several figures in this article, is to present a biplot in two side-by-side panels, one for Items and one for SNPs. Another stratagem is to focus on a manageable subset of SNPs of particular interest and show only them in a biplot in order to avoid obscuring the Items. A later section on causal exploration by current methods mentions several procedures for identifying particularly relevant SNPs.

    One of several data transformations is ordinarily applied to SNP data prior to PCA computations, such as centering by SNPs. These transformations make a huge difference in the appearance of PCA graphs or biplots. A SNPs-by-Items data matrix constitutes a two-way factorial design, so analysis of variance (ANOVA) recognizes three sources of variation: SNP main effects, Item main effects, and SNP-by-Item (S×I) interaction effects. Double-Centered PCA (DC-PCA) removes both main effects in order to focus on the remaining S×I interaction effects. The resulting PCs are called interaction principal components (IPCs), and are denoted by IPC1, IPC2, and so on. By way of preview, a later section on PCA variants argues that DC-PCA is best for SNP data. Surprisingly, our literature survey did not encounter even a single analysis identified as DC-PCA.

    The axes in PCA graphs or biplots are often scaled to obtain a convenient shape, but actually the axes should have the same scale for many reasons emphasized recently by Malik and Piepho [3]. However, our literature survey found a correct ratio of 1 in only 10% of the articles, a slightly faulty ratio of the larger scale over the shorter scale within 1.1 in 12%, and a substantially faulty ratio above 2 in 16% with the worst cases being ratios of 31 and 44. Especially when the scale along one PCA axis is stretched by a factor of 2 or more relative to the other axis, the relationships among various points or clusters of points are distorted and easily misinterpreted. Also, 7% of the articles failed to show the scale on one or both PCA axes, which leaves readers with an impressionistic graph that cannot be reproduced without effort. The contemporary literature on PCA of SNP data mostly violates the prohibition against stretching axes.

    pca-how-to
    DC-PCA biplot for oat data. The gradient in the CA-arranged matrix in Fig 13 is shown here for both lines and SNPs by the color scheme red, pink, black, light green, dark green.

    The percentage of variation captured by each PC is often included in the axis labels of PCA graphs or biplots. In general this information is worth including, but there are two qualifications. First, these percentages need to be interpreted relative to the size of the data matrix because large datasets can capture a small percentage and yet still be effective. For example, for a large dataset with over 107,000 SNPs for over 6,000 persons, the first two components capture only 0.3693% and 0.117% of the variation, and yet the PCA graph shows clear structure (Fig 1A in [4]). Contrariwise, a PCA graph could capture a large percentage of the total variation, even 50% or more, but that would not guarantee that it will show evident structure in the data. Second, the interpretation of these percentages depends on exactly how the PCA analysis was conducted, as explained in a later section on PCA variants. Readers cannot meaningfully interpret the percentages of variation captured by PCA axes when authors fail to communicate which variant of PCA was used.

    Conclusion

    Five simple recommendations for effective PCA analysis of SNP data emerge from this investigation.

    1. Use the SNP coding 1 for the rare or minor allele and 0 for the common or major allele.
    2. Use DC-PCA; for any other PCA variant, examine its augmented ANOVA table.
    3. Report which SNP coding and PCA variant were selected, as required by contemporary standards in science for transparency and reproducibility, so that readers can interpret PCA results properly and reproduce PCA analyses reliably.
    4. Produce PCA biplots of both Items and SNPs, rather than merely PCA graphs of only Items, in order to display the joint structure of Items and SNPs and thereby to facilitate causal explanations. Be aware of the arch distortion when interpreting PCA graphs or biplots.
    5. Produce PCA biplots and graphs that have the same scale on every axis.

    I read the referenced paper Biplots: Do Not Stretch Them!, by Malik and Piepho (2018), and even though it is not directly applicable to the most commonly available PCA graphs out there, it is a good reminder of the distorting effects of stretching. So for example quite recently in Krause-Kyora et al. (2018), where you can see Corded Ware and BBC samples from Central Europe clustering with samples from Yamna:

    NOTE. This is related to a vertical distorsion (i.e. horizontal stretching), but possibly also to the addition of some distant outlier sample/s.

    pca-cwc-yamna-bbc
    Principal Component Analysis (PCA) of the human Karsdorf and Sorsum samples together with previously published ancient populations projected on 27 modern day West Eurasian populations (not shown) based on a set of 1.23 million SNPs (Mathieson et al., 2015). https://doi.org/10.7554/eLife.36666.006

    The so-called ‘Yamnaya’ ancestry

    Every time I read papers like these, I remember commenters who kept swearing that genetics was the ultimate science that would solve anthropological problems, where unscientific archaeology and linguistics could not. Well, it seems that, like radiocarbon analysis, these promising developing methods need still a lot of refinement to achieve something meaningful, and that they mean nothing without traditional linguistics and archaeology… But we already knew that.

    Also, if this is happening in most peer-reviewed publications, made by professional geneticists, in journals of high impact factor, you can only wonder how many more errors and misinterpretations can be found in the obscure market of so many amateur geneticists out there. Because amateur geneticist is a commonly used misnomer for people who are not geneticists (since they don’t have the most basic education in genetics), and some of them are not even ‘amateurs’ (because they are selling the outputs of bioinformatic tools)… It’s like calling healers ‘amateur doctors’.

    NOTE. While everyone involved in population genetics is interested in knowing the truth, and we all have our confirmation (and other kinds of) biases, for those who get paid to tell people what they want to hear, and who have sold lots of wrong interpretations already, the incentives of ‘being right’ – and thus getting involved in crooked and paranoid behaviour regarding different interpretations – are as strong as the money they can win or loose by promoting themselves and selling more ‘product’.

    As a reminder of how badly these wrong interpretations of genetic results – and the influence of the so-called ‘amateurs’ – can reflect on research groups, yet another turn of the screw by the Copenhagen group, in the oral presentations at Languages and migrations in pre-historic Europe (7-12 Aug 2018), organized by the Copenhagen University. The common theme seems to be that Bell Beaker and thus R1b-L23 subclades do represent a direct expansion from Yamna now, as opposed to being derived from Corded Ware migrants, as they supported before.

    NOTE. Yes, the “Yamna → Corded Ware → Únětice / Bell Beaker” migration model is still commonplace in the Copenhagen workgroup. Yes, in 2018. Guus Kroonen had already admitted they were wrong, and it was already changed in the graphic representation accompanying a recent interview to Willerslev. However, since there is still no official retraction by anyone, it seems that each member has to reject the previous model in their own way, and at their own pace. I don’t think we can expect anyone at this point to accept responsibility for their wrong statements.

    So their lead archaeologist, Kristian Kristiansen, in The Indo-Europeanization of Europé (sic):

    kristiansen-migrations
    Kristiansen’s (2018) map of Indo-European migrations

    I love the newly invented arrows of migration from Yamna to the north to distinguish among dialects attributed by them to CWC groups, and the intensive use of materials from Heyd’s publications in the presentation, which means they understand he was right – except for the fact that they are used to support a completely different theory, radically opposed to those defended in Heyd’s model

    Now added to the Copenhagen’s unending proposals of language expansions, some pearls from the oral presentation:

    • Corded Ware north of the Carpathians of R1a lineages developed Germanic;
    • R1b borugh [?] Italo-Celtic;
    • the increase in steppe ancestry on north European Bell Beakers mean that they “were a continuation of the Yamnaya/Corded Ware expansion”;
    • Corded Ware groups [] stopped their expansion and took over the Bell Beaker package before migrating to England” [yep, it literally says that];
    • Italo-Celtic expanded to the UK and Iberia with Bell Beakers [I guess that included Lusitanian in Iberia, but not Messapian in Italy; or the opposite; or nothing like that, who knows];
    • 2nd millennium BC Bronze Age Atlantic trade systems expanded Proto-Celtic [yep, trade systems expanded the language]
    • 1st millennium BC expanded Gaulish with La Tène, including a “Gaulish version of Celtic to Ireland/UK” [hmmm, dat British Gaulish indeed].

    You know, because, why the hell not? A logical, stable, consequential, no-nonsense approach to Indo-European migrations, as always.

    Also, compare still more invented arrows of migrations, from Mikkel Nørtoft’s Introducing the Homeland Timeline Map, going against Kristiansen’s multiple arrows, and even against the own recent fantasy map series in showing Bell Beakers stem from Yamna instead of CWC (or not, you never truly know what arrows actually mean):

    corded-ware-migrations
    Nørtoft’s (2018) maps of Indo-European migrations.

    I really, really loved that perennial arrow of migration from Volosovo, ca. 4000-800 BC (3000+ years, no less!), representing Uralic?, like that, without specifics – which is like saying, “somebody from the eastern forest zone, somehow, at some time, expanded something that was not Indo-European to Finland, and we couldn’t care less, except for the fact that they were certainly not R1a“.

    This and Kristiansen’s arrows are the most comical invented migration routes of 2018; and that is saying something, given the dozens of similar maps that people publish in forums and blogs each week.

    NOTE. You can read a more reasonable account of how haplogroup R1b-L51 and how R1-Z645 subclades expanded, and which dialects most likely expanded with them.

    We don’t know where these scholars of the Danish workgroup stand at this moment, or if they ever had (or intended to have) a common position – beyond their persistent ideas of Yamnaya™ ancestral component = Indo-European and R1a must be Indo-European – , because each new publication changes some essential aspects without expressly stating so, and makes thus everything still messier.

    It’s hard to accept that this is a series of presentations made by professional linguists, archaeologists, and geneticists, as stated by the official website, and still harder to imagine that they collaborate within the same professional workgroup, which includes experienced geneticists and academics.

    I propose the following video to close future presentations introducing innovative ideas like those above, to help the audience find the appropriate mood:

    Related

    The origin of social complexity in the development of the Sintashta culture

    kamenni-ambar

    Very interesting PhD thesis by Igor Chechushkov, Bronze Age human communities in the Southern Urals steppe: Sintashta-Petrovka social and subsistence organization (2018).

    Abstract:

    Why and how exactly social complexity develops through time from small-scale groups to the level of large and complex institutions is an essential social science question. Through studying the Late Bronze Age Sintashta-Petrovka chiefdoms of the southern Urals (cal. 2050–1750 BC), this research aims to contribute to an understanding of variation in the organization of local communities in chiefdoms. It set out to document a segment of the Sintashta-Petrovka population not previously recognized in the archaeological record and learn about how this segment of the population related to the rest of the society. The Sintashta-Petrovka development provides a comparative case study of a pastoral society divided into sedentary and mobile segments.

    Subsurface testing on the peripheries of three Sintashta-Petrovka communities suggests that a group of mobile herders lived outside the walls of the nucleated villages on a seasonal basis. During the summer, this group moved away from the village to pasture livestock farther off in the valley, and during the winter returned to shelter adjacent to the settlement. This finding illuminates the functioning of the year-round settlements as centers of production during the summer so as to provide for herd maintenance and breeding and winter shelter against harsh environmental conditions.

    The question of why individuals chose in this context to form mutually dependent relationships with other families and thus give up some of their independence can be answered with a combination of two necessities: to remain a community in a newly settled ecological niche and to protect animals from environmental risk and theft. Those who were skillful at managing communal construction of walled villages and protecting people from military threats became the most prominent members of the society. These people formed the core of the chiefdoms but were not able to accumulate much wealth and other possessions. Instead, they acquired high social prestige that could even be transferred to their children. However, this set of relationships did not last longer than 300 years. Once occupation of the region was well established the need for functions served by elites disappeared, and centralized chiefly communities disintegrated into smaller unfortified villages.

    sintashta-petrovka-archaeological
    Research area: map of the Sintashta-Petrovka archaeological sites. Settlements: 101 – Stepnoye; 102 – Shibaeyvo 1; 103 – Chernorechye 3; 104 – Bakhta; 105 – Paris; 106 – Isiney; 107 – Kuisak; 108 – Ust’ye; 109 – Rodniki; 110 – Konoplyanka; 111 – Zhurumbay; 112 – Arkaim; 113 – Sintashta; 114 – Sintashta 2; 115 – Kamennyi Ambar; 116 – Alandskoye; 117 – Chekatay; 118 – Selek; 119 – Sarym- Sakly; 120 – Kamysty; 121 – Kizilskoye; 122 – Bersuat; 123 – Andreyevskoe; 124 – Ulak; 125 – Streletskoye; 126 – Zarechnoye 4; 127 – Kamennyi Brod. Cemeteries: 201 – Ozernoye 1; 202 – Krivoe Ozero; 203 – Stepnoye M; 204 – Kamennyi Ambar-5; 205 – Stepnoye 1; 206 – Tsarev Kurgan; 207 – Ubagan 2; 208 – Solntse 2; 209 – Bolshekaraganskyi; 210 – Aleksandrovsky 4; 211 – Sintashta; 212 – Solonchanka 1a; 213 – Knyazhenskyi; 214 – Bestamak; 215 – Ishkinovka 1; 216 – Ishkinovka 2; 217 – Novo–Kumakskyi; 218 – Zhaman–Kargala 1; 219 – Tanabergen 2; 220 – Novo-Petrovka; 221 – Semiozernoye 2; 222 – Khalvayi 3

    Some interesting excerpts (emphasis mine):

    The quintessential archaeological evidence of Sintashta-Petrovka communities takes the form of highly nucleated and fortified settlements paired with easily-recognized kurgan (burial mound) cemeteries. This pattern spread across Northern Central Eurasia in a relatively short period of about 300 years (cal. 2050–1750 BC), and the period consists of two chronological phases (Hanks et al. 2007). The earlier Sintashta phase (cal. 2050–1850 BC) is distinguished from the later Petrovka phase (cal. 1850–1750 BC) by some differences in ceramic styles and some techniques of bronze metallurgy (Degtyareva et al. 2001; Vinogradov 2013). Bronze Age subsistence patterns apparently relied on a wide variety of resources, among which meat and milk production played a major role (…). The most outstanding graves are individual male burials accompanied by weaponry (projectile weapons and chariots), the insignia of power (stone mace heads), craft tools, and a specific set of sacrificed animals (horses, cows, and dogs). (…) there were at least two adults buried with chariots and one with sacrificed horses (Epimakhov 1996b). Chariots – the most famous and spectacular material component of Sintashta-Petrovka society – are known exclusively from burial contexts. Two-wheeled vehicles represent complex technology, incorporating some crucial innovations and the investment of substantial resources. Highly developed craft and military skills were required for their production and use. Burials with chariots probably represent military elites who used them (Anthony 2009; Chechushkov 2011; Frachetti 2012:17) and played especially important social roles in Sintashta-Petrovka societies. This pattern strongly suggests that military leadership extended into the realm of ideology and general social prestige (Earle 2011:32–33).

    The following sequence of archaeological cultures – based on the sample of radiocarbon dates (Epimakhov 2007a; 2010a), – is adopted: (1) the Sintashta-Petrovka phase 1 dated to cal. 2050–1750 BC and (2) the Srubnaya-Alakul’ phase 2 dated to cal. 1750–1350 BC.

    (…) control of craft might have provided a source of power for elites in the fortified settlements (Steponaitis 1991). Some bronze tools, such as chisels, adzes, and handsaws seem more abundantly represented at some fortified settlements than at others, raising the possibility of a stronger focus on different craft products and some degree of exchange and interdependence between fortified settlements. (…) Zdanovich (1995:35) estimates 2500 people within the walls at Arkaim. He bases his conclusion an average house size of 140 m2 and the idea that Arkaim households consisted of an extended family of several generations, similar to Iroquois longhouse inhabitants. He also suggests that the entire population did not live in the “town” all the time, but moved around. The fully permanent residents were shamans, warriors, and craftsmen, i.e., elites and attached specialists.

    Summarizing, excavated households represent very strongly similar architectural patterns, similar levels of wealth and prestige, little productive differentiation, and no evidence of elites amassing wealth through control of craft or subsistence production or any other mechanism (Earle 1987). These observations sharply contradict the burial record, where strong social differentiation is visible. The description above recalls the Regional Classic period elites of the Alto Magdalena whose standard of living differed little if at all from anyone else’s. Their elaborate tombs and sculptures suggest supernatural powers and ritual roles were much more important bases of their social prominence than economic control or accumulation of wealth (Drennan 1995:96–97). On the other hand, craft activities (especially metal production) are highly obvious in the Sintashta-Petrovka settlements. Defensive functions could also have played some role for the entire population. This benefit might attract people in an unstable or wild environment to spend much of their time in or near such settlements (Earle 2011:32–33). Since the construction of ditches and outer walls, as well as dwellings with shared walls, requires planning and organization, purposeful collective effort must have been a key feature of Sintashta-Petrovka communities (Vinogradov 2013; Zdanovich 1995). Sintashta-Petrovka communities thus evidence substantial investment of effort in non-subsistence activities, potentially resulting in a subsistence deficit in an economy with a heavy emphasis on herding. Altogether, this makes it plausible to think of the known Sintashta-Petrovka communities as special places where elites for whom military activities were important resided, and where metal production and possibly other crafts were carried out. It remains unclear just how a subsistence economy relying heavily on herding was managed from these substantial sedentary communities. Moving herds around the landscape seasonally is generally thought to be a part of subsistence strategy in Inner Eurasia (Frachetti 2008; Bachura 2013). In this area migration to exploit seasonal pastures is the best strategy for maintaining a regular supply of food for livestock due to shortages of capital or of labor pool to produce, harvest, and store fodder (Dyson-Hudson and Dyson-Hudson 1980:17). The recent stable isotope studies support this notion showing high likelihood that during the Bronze Age livestock was raised locally (Kiseleva et al. 2017).

    The above raises the possibility that the residential remains that have been excavated within the fortifications of Sintashta-Petrovka communities represent only a portion of the population (Hanks and Doonan 2009, Johnson and Hanks 2012). It could be (along with the general lines suggested by D. Zdanovich [1997]) that the archaeological remains of the ordinary people who made up the majority of the population, built the impressive fortifications and stoked the subsistence economy have gone largely undetected. In global comparative perspective, many societies with the features known for Sintashta-Petrovka organization consisted of elite central-place settlements and hinterland populations. In such a scenario, the “missing” portion of the Sintashta population would reside in smaller unfortified settlements scattered around in the vicinity of the fortified ones.

    kamenni-ambar-cultural-layer

    In terms of wealth and productive differentiation, the inside assemblage of Kamennyi Ambar demonstrates a higher degree of richness and diversity in its material assemblage, leading to the conclusion that the outside materials may represent a semi-mobile group of people who used significantly less durable materials and accumulated less possessions. As for the diversity within the inside artifact assemblage, some households at Kamennyi Ambar demonstrate more diverse artifact assemblages than others, as well as bigger sizes, that could be related to differences in productive activities and/or wealth differentiation between families. A focus on specific objects of ceramic production in House 1 suggests some degree of productive specialization, while the elite goods in House 5 clearly point out the presence of elite members of the society.

    There are two possible social scenarios that explain the settlement situation during the Sintashta-Petrovka phase. The first scenario considers all three communities as simultaneous and the second scenario suggests seeing the three sites as the same community that moved around the landscape during the Late Bronze Age in order to keep the pasture grounds from degradation.

    Since no remains of permanent structures were found and any people living outside the walls must have stayed in temporary shelters. If this was the case, then the outside part of the population consisted of a semi-mobile group of people who moved to live near the fortified settlement during the winter. The pattern of animal slaughtering supports this conclusion. Animal teeth found near Kamennyi Ambar and Konoplyanka demonstrate a tendency for animal butchering during the fall, throughout the winter and spring, with less evidence of summer meat consumption. Moreover, since the Bronze Age subsistence strategy relied heavily on pastoralism, herds had to be grazed during the summer and kept safe during the winter. This strongly suggests that the part of the population responsible for management of animals spent their time in the summer pastures with the livestock. During the winter the animals had to be kept in the warm and safe environment of the walled settlements (as suggested by the highest level of phosphorus on the house floors) while the herders stayed in portable shelters in close to the walls.

    (…) the outsiders used a less diverse set of tools, as well as less durable materials (for example, wooden instead of metal) in their everyday life and did not accumulate much in the way of archaeologically visible possessions. On the other hand, a few stone and lithic artifacts demonstrate that craft activities were carried out using cheap and abundant raw materials. The artefact assemblages also point out that the people inside accumulated wealth in the form of material belongings and luxury goods, especially, things like metal artifacts and symbolic or military-related stone artifacts, while people outside did not do that. However, the presence of semi-precious stones could signify some kind of wealth accumulation by the segment of population outside the walls. Since there are limits to our ability to assess social relationships from material remains, it is difficult to say if the people who lived outside the walls were oppressed or less respected. Their possible concentration on herding-related activities and livestock keeping might suggest less prestigious social status. The most prominent members of the society were, nonetheless, buried with the attributes of warriors or craft specialists, not those of shepherds, suggesting that those involved in livestock management had less social prestige.

    Furthermore, Kuzmina (1994:72) cites linguistic studies demonstrating that the Sanskrit word for a permanent village earlier meant a circle of mobile wagon homes, situated together for defensive purposes for an overnight camp (Kuzmina 1994:72).

    The likely population of semi-mobile herders represented some 30%–60% of the entire local community, while the other of 40%–70% were inhabitants of the walled settlement. The almost completely excavated kurgan cemetery of Kamennyi Ambar-5 (only two kurgans remain unstudied) yielded about 100 individuals, or about 2%–5% of the total of 4,896±1,960 individuals in four generations who lived at the nearby settlement for 100 years. In other words, no more than 10% of the population was entitled to be buried under the kurgan mound and this proportion can be taken as an estimate of those with elevated social status. Perhaps, these elites were kin, since analysis of the burial patterns suggests sex/age rather than wealth/prestige differentiation between buried individuals within this elite group (Epimakhov and Berseneva 2011; Ventresca Miller 2013). The remaining non-elite members of the permanently resident community, then, represented some 30%–60% of the complete local community, but did not show evidence of standards of living particularly lower than the elites eventually interred in the kurgan.

    (…) The buried population in the Sintashta Cemetery is about 80 individuals or only about 2%–3% of the total estimated population. However, these few individuals were buried with extremely rich offerings, like complete chariots, decorations made of precious metals or sacrifices of six horses (equal to about 900 kg of meat), etc. With such a low proportion of the population assigned such high prestige, the Sintashta local community can easily be labeled a local chiefdom. In Pitman and Doonan’s view (2018) the social structure of the chifedom consisted of a chief and his kin at the highest level; warriors, religious specialists, and craftsmen in the middle; and the pastoral community at the bottom level.

    kamenni-ambar-excavations

    In the Bronze Age, the people who comprised the majority of the permanent population were involved in craft activities, including extraction of copper ores, metallurgy, bone, leather, and woodwork. The most important and labor-intensive part of the economy, however, was haymaking. The evidence of hay found in the cultural layer near Kamennyi Ambar supports the idea that animals were fed during the winter. Nowadays, hay cutting is typically done in July-August, the period of most intensive grazing for animals. Thus, the part of the collective that remained in the settlement had to provide the labor force for haymaking.

    In the wintertime, the herders returned to the settlements with the herds, and animals were kept inside the walls––a practice which is known archaeologically (Zakh 1995) and ethnographically (Shahack-Gross et al. 2004)––while herders stayed outside in their tents.

    In sum, the Sintashta-Petrovka chiefdoms demonstrate a three-part social order. In Kuzmina’s (1994) view, this is similar to the Varna system of ancient India, that consisted of priests (Sansk. Brahmanis), rulers and warriors (Sansk. Kshatriyas), free producers (Sansk. Vaishyas) and laborers and service providers (Sansk. Shudras). In the Sintashta-Petrovka chiefdom, the elite 2%–5% of the population would have consisted of priests and warriors; 48%–55% would have been dependent producers; and 50%–60% would have been herders of lower social rank.

    sintashta-petrovka-settlements
    The map of the Bronze Age sites in the Karagaily-Ayat Valley Sites of Phase 1: 101 – Konoplyanka; 102 – Zhurumbay; 103 – Kamennyi Ambar; 104 – Kamennyi Ambar-5 Sites of Phase 2: 201 – Konoplyanka 1; 202 – Varshavskoye-1; 203 – Zhurumbay-1; 204 – Varshavskoye-3; 205 – Varshavskoye-5; 206 – Varshavskoye-9; 207 – Kamennyi Ambar-8; 208 – Kamennyi Ambar; 209 – Elizavetpolskoye-3; 210 – Elizavetpolskoye-2; 211 – Karagayli-26; 212 – Elizavetpolskoye-7; 213 – Elizavetpolskoye- 9; 214 – Yuzhno-Stepnoyi (1); 215 – Yuzhno-Stepnoyi (2)

    Conclusions

    In the case of the Sintashta-Petrovka chiefdoms, the questions of why and how exactly social complexity developed through time and why individuals choose to integrate and give up their independence can be answered as some combination of two necessities: to persist as a larger community in the ecological niche of the newly settled region, and to protect herds from theft.

    There is general agreement among researchers that the Sintashta phenomenon had no local roots and originated with a large-scale migration of pastoral communities from Eastern Europe to the marginal area of the Southern Urals. This process forced families to stay together and fueled the necessity in the walled villages for ensuring the reproduction of herds in the extreme climatic conditions of the southern Urals that are colder and dryer than the eastern Black Sea region from which the Sintashta populations are thought to have migrated (Kuzmina 1994, 2007; Anthony 2007; Vinogradov 2011, etc.). At the same time, the herds needed protection from animal and human predators. Probably, the risk of losing animals was a threat to survival that created tensions between neighboring communities, and the Neolithic hunter-gatherers who had populated the Urals before the arrival of Sintashta people could have hunted the domestic animals. Apparently, those who were talented in managing the construction of closely-packed villages surrounded by ditches and walls to protect people and livestock from threats from neighbors, and who otherwise served the community in the newly colonized zone became the most prominent members of society. Theses people formed the core of the Sintashta-Petrovka chiefdom but were not able to accumulate much personal wealth in the form of material possessions. Instead, they acquired high social prestige that could even be transferred to their children (since up to 65% of the buried elite population consists of infants [Razhev and Epimakhov 2005). In this sense, the Sintashta-Petrovka elites were simmilar to their counterparts in the Alto Magdalena of Colombia (Drennan 1995; Gonzalez Fernandez 2007; Drennan and Peterson 2008).

    However, this situation did not last longer than 300 years, since after the initial phase of colonization of the Southern Urals was over, the need for social services provided by an elite disappeared and centralized chiefly communities disintegrated into the smaller unfortified villages of the Srubnaya-Alakul’ period.

    As I have said many times already (see e.g. here) the outsider pastoralists, forming originally the vast majority of the population, were most likely Pre-Proto-Indo-Iranian speakers of haplogroup R1b-Z2103, and their elite groups (whose inheritance system was based on kinship) probably incorporated gradually Uralic-speaking families of haplogroup R1a-Z93, whose relative importance increased gradually, and then eventually expanded massively with the migrations of Andronovo and Srubna, creating a second Y-chromosome bottleneck that favoured again Z93 subclades. The adaptation of Pre-Proto-Indo-Iranian to the Uralic pronunciation, and the adoption of PII vocabulary in neighbouring Proto-Finno-Ugric bear witness to this process.

    Related

    On the origin of haplogroup R1b-L51 in late Repin / early Yamna settlers

    steppe-eneolithic-migrations

    A recent comment on the hypothetical Central European origin of PIE helped me remember that, when news appeared that R1b-L51 had been found in Khvalynsk ca. 4250-4000 BC, I began to think about alternative scenarios for the expansion of this haplogroup, with one of them including Central Europe.

    Because, if YFull‘s (and Iain McDonald‘s) estimation of the split of R1b-L23 in L51 and Z2103 (ca. 4100 BC, TMRCA ca. 3700 BC) was wrong, by as much as the R1a-Z645 estimates proved wrong, and both subclades were older than expected, then maybe R1b-L51 was not part of the Yamna expansion, but rather part of an earlier expansion with Suvorovo-Novodanilovka into central Europe.

    That is, R1b-L51 and R1b-Z2103 would have expanded wih Khvalynsk-Novodanilovka migrants, and they would have either disappeared among local populations, or settled and expanded with successful lineages in certain regions. I think this may give rise to two potential models.

    A hidden group in the European east-central steppes?

    Here is what Heyd (2011), for example, has to say about the effect of the Khvalynsk-Novodanilovka expansion in the 4th millennium BC, with the first Kurgan wave that shuttered the social, economic, and cultural foundations of south-eastern Europe (before the expansion of west Yamna migrants in the region):

    indo-european-anatolian-uralic-migrations
    Proto-Anatolian migrations with Khvalynsk-Novodanilovka expansion, including ADMIXTURE data from Wang et al. (2018).

    As the Boleraz and Baden tumuli cases in Serbia and Hungary demonstrate, there are earlier, 4th millennium cal. B.C. round tumuli in the Carpathian basin. There are also earlier north-Pontic steppe populations who infiltrated similar environments west of the Black Sea prior to the rise of the Yamnaya culture. This situation can be traced back to the 2nd half of the 5th millennium cal. B.C. to a group of distinct burials, zoomorphic maceheads, long flint blades, triangular flint points, etc., summarized under the term Suvurovo-Novodanilovka (Govedarica 2004; Rassamakin 2004; Anthony 2007; Heyd forthcoming 2011). They also erected round personalized tumuli, though smaller in size and height, above inhumations of single individuals. Suvorovo and Casimcea are the key examples in the lower Danube region of Romania. In northeast Bulgaria, the primary grave of Polska Kosovo (ochre-stained supine extended body position: information communicated by S. Alexandrov) can also be seen as such, as should the Targovishte-“Gonova mogila” primary grave 1 in the Thracian plain with a burial arranged in a supine position with flexed legs, southeast-northwest orientated, and strewed with ochre (Kanchev 1991 , p. 56- 57; Ivanova Gaydarska 2007). In addition to the many copper and shell beads, the 17.4cm long obsidian blade is exceptional, which links this grave to the Csongrád-“Kettoshalom” grave in the south Hungarian plain (Ecsedy 1979). It also yielded an obsidian blade ( 13.2cm long) and copper, shell and limestone beads.

    suvorovo-novodanilovka-expansion-europe
    The Southeast European distribution of graves of the Suvorovo-Novodanilovka group and such unequipped ones mentioned in the text which can be attributed by burial custom and stratigraphic position in the barrow, plus zoomorphic and abstract animal head sceptres as well as specific maceheads with knobs as from Decea Maresului (mid-5th millennium until around 4000 BC). Heyd (2016).

    However, no traces of a tumulus have been recorded above the Kettoshalom tomb. Conventionally, it is dated to the Bodrogkeresztur-period in east Hungary, shortly after 4000 cal. B.C., which would correspond very well with the suggested Cernavodă I (or its less known cultural equivalent in the Thracian plain) attribution for the “Gonova mogila” grave, a cultural background to which the Csongrád grave should have also belonged. Bodrogkeresztur and Cernavodă I periods are not the only examples of 4th millennium cal. B.C. tumuli and burials displaying this steppe connection. Indeed we can find this early steppe impact throughout the 4th millennium cal. B.C. These include adscriptions to the Horodiștea II (Corlateni-Dealul Stadole, grave I: Burtanescu l 998, p. 37; Holbocai, grave 34: Coma 1998, p. 16); to Gordinești-Cernavodă 11 (Liești-Movila Arbănașu, grave 22: Brudiu 2000); to Gorodsk-Usatovo (Corlăteni Dealul Cetăţii, grave I: Comșa 1998, p. 17- 18, in Romania; Durankulak, grave 982: Vajsov 2002, in Bulgaria); and to Cernavodă III(Golyama Detelina, tum. 4: Leshtakov, Borisov 1995), and early (end of 4th millennium cal. B.C.) Ezero in Ovchartsi, primary grave (Kalchev 1994, p. 134-138) and Golyama Detelina, tum. 2 (Kanchev 1991) in Bulgaria. Also the Boleráz and Baden tumuli of Banjevac-Tolisavac and Mokrin in the south Carpathian basin account for this, since one should perhaps take into account primary grave 12 of the Sárrédtudavari-Orhalom tumulus in the Hungarian Alfold: a left-sided crouched juvenile ( 15- 17 y) individual in an oval, NW-SE orientated grave pit 14C dated to 3350-3100 cal. B.C. at 2 sigma (Dani, Ncpper 2006). Neither the burial custom (no ochre strewing or depositing a lump of ochre has been recorded), nor date account for its ascription to the Yamnaya!

    All of these tumuli and burials demonstrate, though, that there is already a constant but perhaps low-level 4th millennium cal. B.C. steppe interaction, linking the regions of the north of the Black Sea with those of the west, and reaching deep into the Carpathian basin. This has to be acknowledged. even if these populations remain small, bounded to their steppe habitat with an economy adapted to this special environment, and are not always visible in the record. Indirect hints may help in seeing them, such as the frequent occurrence of horse bones, regarded as deriving from domesticated horses, in Hungarian Baden settlements (Bokonyi 1978; Benecke 1998), and in those of the south German Cham Culture (Matuschik 1999, p. 80-82) and the east German Bernburg Culture (Becker 1999; Benecke 1999). These occur, however, always in low numbers, perhaps not enough to maintain and regenerate a herd. Does this point us towards otherwise archaeologically hidden horsebreeders in the Carpathian basin, before the Yamnaya? In any case, I hope to make one case clear: these are by no means Yamnaya burials in the strict definition! Attribution to the Yamnaya in its strict definition applies.

    pit-graves-central-europe
    Distribution of Pit-Grave burials west of the Black Sea likely dating to the 2nd half of the 4th millennium BC (triangles: side-crouched burials; filled circles: supine extended burials; open circles: suspected). In Alin Frînculeasa, Bianca Preda, Volker Heyd, Pit-Graves, Yamnaya and Kurgans along the Lower Danube.

    Also, about the expansion of Yamna settlers along the steppes:

    However, it should have been made clear by the distribution map of the Western Yamnaya that they were confining themselves solely to their own, well-known, steppe habitat and therefore not occupying, or pushing away and expelling, the locally settled farming societies. Also, living solely in the steppes requires another lifestyle, and quite different economic and social bases, most likely very different to the established farming societies. Although surely regarded as incoming strangers, they may therefore not have been seen as direct competitors. This argument can be further enforced when remembering that the lowlands and the steppes in the southeast of Europe had already been populated throughout the 4th millennium cal. B.C., as demonstrated above, by societies with a similar north-Pontic steppe origin and tradition, albeit in lower numbers. It is only for these groups that the Yamnaya may have become a threat, but their common origin and perhaps a similar economic/ social background with comparable lifestyles would surely have assisted to allow rapid assimilation. More important, though, is that farming societies in this region may therefore have been accustomed to dealing and interacting with different people and ethnic strangers for a long time. (…)

    When assessing farming and steppe societies’ interaction from a general point of view, attitudes can diverge in three main directions:

    1. the violent one; with raids, fights, struggles, warfare, suppression and finally the superiority and exploitation of the one over the other;
    2. the peaceful one; with a continuous exchange of gifts, goods, work, information and genes in a balanced reciprocal system, leading eventually to the merging of the two societies and creation of a new identity;
    3. the neutral one; with the two societies ignoring each other for a long time.

    What we see from trying to understand the record of the Yamnaya, based on their tumuli and burials, and the local and neighbouring contemporary societies, based on their settlements, hoards, and graves, is likely a mixture of all three scenarios, with the balance perhaps more towards exchange in a highly dynamic system with alterations over time. However, violence and raids cannot be ruled out; they would be difficult to see in the archaeological record; or only indirectly, such as the building of hill forts, particularly the defence-like chain of Vucedol hillforts along the south shore of the Danube on the Serbian/Croatian border zone (Tasic 1995a), and the retreat of people into them (Falkenstein 1998, p. 261-262), with other interpretations also possible. And finally, we are dealing here with very different local and neighbouring societies, as well as with more distant contemporary ones, looking, in reality, rather like a chequer board of societies and archaeological cultures (see Parzinger 1993 for the overview). These display different regional backgrounds and traditions leading to different social and settlement organizations, different economic bases and material cultures in the wide areas between Prut and Maritza rivers, and Black Sea and Tisza river. They surely found their individual way of responding to the incoming and settling Yamnaya people.

    yamna-tumuli-west-carpathians
    Yamnaya tumuli signalling the expansion of West Yamna from ca. 3100 BC (especially after ca. 2950 BC). Heyd (2011).

    The best data we have about this potential non-Yamna origin of R1b-L51 – and thus in favour of its admixture in the Carpathian basin – lies in:

    1. The majority of R1a-Z2103 subclades found to date among Yamna samples.
    2. The presence of R1b-Z2103 in the Catacomb culture – in the Northern Caucasus and in Ukraine.
    3. The limited presence of (ancient and modern) R1b-L51 in eastern Europe and India, whose isolated finds are commonly (and simplistically) attributed to ‘late migrations’.
    4. The presence of R1b-L51 (xZ2103) in cultures related to the ‘Yamna package’, but supposedly not to Yamna settlers. So for example I7043, of haplogroup R1b-L151(xU106,xP312), ca. 2500-2200 BC from Szigetszentmiklós-Üdülősor, probably from the Bell Beaker (Csepel group), but maybe from the early Nagýrev culture.
    5. The expansion of its subclades apparently only from a single region, around the Carpathian basin, in contrast to R1b-Z2103.
    6. The already ‘diluted’ steppe admixture found in the earliest samples with respect to Yamna, which points to the appearance after the Yamna admixture with the local population.
    7. Ukrainian archaeologists (in contrast to their Russian colleagues) point to the relevance of North Pontic cultures like Kvitjana and Lower Mikhailovka in the development of Early Yamna in the west, and some eastern European researchers also believe in this similarity.
    8. If R1b-Z2103 and R1b-L51 had expanded with Suvorovo-Novodanilovka migrants to the west, and had admixed later as Hungary_LCA-LBA-like peoples with Yamna migrants during the long-term contacts with other ‘kurganized cultures’ ca. 2900-2500 BC in the Great Hungarian Plains, it could explain some peculiar linguistic traits of North-West Indo-European, and also why R1b-Z2103 appears in cultures associated with this earlier ‘steppe influence’ (i.e. not directly related to Yamna) such as Vučedol (with a R1b-Z2103 sample, see below). That could also explain the presence of R1b-L151(xP312, xU106) in similar Balkan cultures, possibly not directly related to Yamna.
    PCA-r1b-l51
    Image modified from Wang et al. (2018). PCA of ancient and modern samples. Red circle in dashed line around Varna, Greece Neolithic, and (approximate position of) Smyadovo outliers, part of Khvalynsk-Novodanilovka settlers.

    A hidden group among north or west Pontic Eneolithic steppe cultures?

    The expansion of Khvalynsk as Novodanilovka into the North Pontic area happened through the south across the steppe, near the coast, with the forest-steppe region working as a clear natural border for this culture of likely horse-riding chieftains, whose economy was probably based on some rudimentary form of mobile pastoralism.

    Although archaeologists are divided as to the origin of each individual Middle Eneolithic group near the Black Sea after the end of the Khvalynsk-Novodanilovka period, it seems more or less clear that steppe cultures like Cernavodă, Lower Mikhailovka, or Kvitjana are closer (or “more archaic”) in their steppe features, which connects them to Volga–Ural and Northern Caucasus cultures, like Northern Caucasus, Repin or Khvalynsk.

    On the other hand, forest-steppe cultures like Dereivka (including Alexandria) show innovative traits and contacts with para- or sub-Neolithic cultures to the north, like Comb-Pit Ware groups, apart from corded decoration influenced by Trypillian groups to the west, especially in their later (‘Proto-Corded Ware‘) stage after ca. 3500 BC.

    If Ukrainian researchers like Rassamakin are right, Early Yamna expanded not only from Repin settlers, but also from local steppe cultures adopting Repin traits to develop an Early Yamna culture, similar to how eastern (Volga–Ural groups) seem to have synchronously adopted Early Yamna without massive affluence of Repin settlements.

    Furthermore, local traits develop in southern groups, like anthropomorphic stelae (shared with Kemi-Oba, direct heir of Lower Mikhailovka), and rich burials featuring wagons. These traits are seen in west Yamna settlers.

    north-pontic-kvityana-dereivka-repin
    Modified from Rassamakin (1999), adding red color to Repin expansion. The system of the latest Eneolithic Pointic cultures and the sites of the Zhivotilovo-Volchanskoe type: 1) Volchanskoe; 2) Zhivotilovka; 3) Vishnevatoe; 4) Koisug.

    Problems of this model include:

    1. On the North Pontic area – in contrast to the Volga–Ural region – , there was a clear “colonization” wave of Repin settlers, also supported by Ukrainian researchers, based on the number of new settlements and burials, and on the progressive retreat of Dereivka, Kvitjana, as well as (more recent) Maykop- and Trypillia-related groups from the North Pontic area ca. 3350/3300 BC. It seems unlikely that these expansionist, semi-nomadic, cattle-breeding, patrilineally-related steppe clans that were driving all native populations out of their territories suddenly decided, at some point during their spread into the North Pontic area ca. 3300-3100 BC, to join forces with some foreign male lineages from the area, and then continue their expansion to the west…
    2. Similar to the fate of R1b-P297 subclades in the Baltic after the expansion of Corded Ware migrants, previous haplogropus of the North Pontic region – such as R1a, R1b-V88, and I2 subclades basically disappeared from the ancient DNA record after the expansion of Khvalynsk-Novodanilovka, and then after the expansion of Yamna, as is clear from Yamna, Afanasevo, and Bell Beaker samples obtained to date. This, in combination with what we know about Y-chromosome bottlenecks in post-Neolithic expansions, leaves little space to think that a big enough territorial group with a majority of “native” haplogroups could survive later expansions (be it R1b-L51 or R1a-Z645).
    3. Supporting an expansion of the same male (and partly female) population, the Yamna admixture from east to west is quite homogeneous, with the only difference found in (non-significant) EEF-like proportion which becomes elevated in distant areas [apart from significant ‘southern’ contribution to certain outlier samples]. Based on the also homogeneous Y-DNA picture, the heterogeneity must come, in general, from the female exogamy practiced by expanding groups.
    4. There is a short period, spanning some centuries (approximately 3300-2700 BC), in which the North Pontic area – especially the forest-steppe territories to the west of the Dnieper, i.e. the Upper Dniester, Boh, and Prut-Siret areas – are a chaos of incoming and emigrating, expanding and shrinking groups of different cultures, such as late Trypillian groups, Maykop-related traits, TRB, GAC, (Proto-)Corded Ware, and Early Yamna settlements. No natural geographic frontier can be delimited between these groups, which probably interacted in different ways. Nevertheless, based on their cultural traits, admixture, and especially on their Y-DNA, it seems that they never incorporated foreign male lineages, beyond those they probably had during their initial expansion trends.
    5. The further expansionist waves of Early Yamna seen ca. 3100 BC, from the Danube Delta to the west, give an overall image of continuously expanding patrilineal clans of R1b-M269 subclades since the Khvalynsk-Novodanilovka migration, in different periodic steps, mostly from eastern Pontic-Caspian nuclei, usually overriding all encountered cultures and (especially male) populations, rather than showing long-term collaboration and interaction. Such interaction is seen only in exceptional cases, e.g. the long-term admixture between Abashevo and Poltavka, as seen in Proto-Indo-Iranian peoples and their language.
    PCA-Ukraine-r1b-l51
    Image modified from Wang et al. (2018). PCA of ancient and modern samples. Arrows depicting Khvalynsk -> Yamna drift (blue), and hypothetic approximate Ukraine Eneolithic -> Yamna drift accompanying R1b-L51 (red).

    Consequences

    We are living right now an exemplary ego-, (ethno-)nationalism-, and/or supremacy-deflating moment, for some individuals of eastern and northern European descent who believed that R1a or ‘steppe ancestry proportions’ meant something special. The same can be said about those who had interiorized some social or ethnolinguistic meaning for the origin of R1b in western Europe, N1c in north-eastern Europe, as well as Greeks, Iranians, Armenians, or Mediterranean peoples in general of ‘Near Eastern’ ancestry or haplogroups, or peoples of Near Eastern origin and/or language.

    These people had linked their haplogroups or ancestry with some fantasy continuity of ‘their’ ancestral populations to ‘their’ territories or languages (or both), and all are being proven wrong.

    Apart from teaching such people a lesson about what simplistic views are useful for – whether it is based on ABO or RH group, white skin, blond hair, blue eyes, lactase persistence, or on the own ancestry or Y-DNA haplogroup -, it teaches the rest of us what can happen in the near future among western Europeans. Because, until recently, most western Europeans were comfortably settled thinking that our ancestors were some remnant population from an older, Palaeolithic or Mesolithic population, who acquired Indo-European languages by way of cultural diffusion in different periods, including only minor migrations.

    Judging by what we can see now among some individuals of Northern and Eastern European descent, the only thing that can worsen the air of superiority among western Europeans is when they realize (within a few years, when all these stupid battles to control the narrative fade) that not only are they the cultural ‘heirs’ of the Graeco-Roman tradition that began with the Roman Empire, but that most of them are the direct patrilineal descendants of Khvalynsk, Yamna, Bell Beaker, and European Bronze Age peoples, and thus direct descendants of Middle PIE, Late PIE, and NWIE speakers.

    steppe-chalcolithic-migrations
    Steppe-related migrations ca. 3100-2600 BC with tentative linguistic identification.

    The finding of R1b-L51 and R1b-Z2103 among expanding Suvorovo-Novodanilovka chieftains, with pockets of R1b-L51 remaining in steppe-like societies of the Balkans and the Carpathian Basin, would have beautifully complemented what we know about the East Yamna admixture with R1a-Z93 subclades (Uralic speakers) ca. 2600-2100 BC to form Proto-Indo-Iranian, and about the regional admixtures seen in the Balkans, e.g. in Proto-Greeks, with the prevalent J subclades of the region.

    It would have meant an end to any modern culture or nation identifying themselves with the ‘true’ Late PIE and Yamna heirs, because these would be exclusively associated with the expansion of R1b-Z2103 subclades with late Repin, and later as the full-fledged Late PIE with Yamna settlers to south-east and central Europe, and to the southern Urals. The language would have had then obviously undergone different language changes in all these territories through long-lasting admixture with other populations. In that sense, it would have ended with the ideas of supremacy in western Europe before they even begin.

    The most likely future

    However limited the evidence, it seems that R1b-L51 expanded with Yamna, though, based on the estimates for the haplogroups involved, and on marginal hints at the variability of L23 subclades within Yamna and neighbouring populations. If R1b-L51 expanded with West Repin / Early Yamna settlers, this is why they have not yet been found among Yamna samples:

    steppe-eneolithic-migrations
    Simplified map of Repin expansions from ca. 3500/3400 BC.
    • The subclade division of Yamna settlers needs not be 50:50 for L51:Z2103, either in time or in space. I think this is the simplistic view underlying many thoughts on this matter. Many different expanding patrilineal clans of L23 subclades may have been more or less successful in different areas, and non-Z2103 may have been on the minority, or more isolated relative to Z2103-clans among expanding peoples on the steppe, especially on the east. In fact, we usually talk in terms of “Z2103 vs. L51” as if
      1. these two were the only L23 subclades; and
      2. both had split and succeeded (expanding) synchronously;

      that is, as if there had not been multiple subclades of both haplogroups, and as if there had not been different expansion waves for hundreds of years stemming from different evolving nuclei, involving each time only limited (successful) clans. Many different subclades of haplogroups L23 (xZ2103, xL51), Z2103, and L51 must have been unsuccessful during the ca. 1,500 years of late Khvalynsk and late Repin-Early Yamna expansions in which they must have participated (for approximately 60-75 generations, based on a mean 20-25 years).

    • If we want to imagine a pocket of ‘hidden’ L51 for some region of the North Pontic or Carpathian region, the same can be imagined – and much more likely – for any unsampled territory of expanding late Repin/Early Yamna settlers from the Lower Don – Lower Volga region (probably already a mixed society of L51 and Z2103 subclades since their beginning, as the early Repin culture, ca. 3800 BC), with L51 clans being probably successful to the west.
    • The Repin culture expanded only in small, mobile settlements from the Lower Don – Lower Volga to the north, east, and south, starting ca. 3500/3400 BC, in the waves that eventually gave a rather early distant offshoot in the Altai region, i.e. Afanasevo. Starting ca. 3300 BC in the archaeological record, the majority of R1b-Z2103 subclades found to date in Afanasevo also supports either
      • a mixed Repin society, with Z2103-clans predominating among eastern settlers; or
      • a Repin society marked by haplogroup L51, and thus a cultural diffusion of late Repin/Early Yamna traits among neighbouring (Khvalynsk, Samara, etc.) groups of essentially the same (early Khvalynsk-Novodanilovka) genetic stock in the Volga–Ural region.

      Both options could justify a majority of Z2103 in the Lower Volga–Ural region, with the latter being supported by the scattered archaeological remains of late Repin in the region before the synchronous emergence of Early Yamna findings in the whole Pontic-Caspian steppe.

    • Most Z2103 from Yamna samples to date are from around 3100 BC (in average) onward, and from the right bank of the Lower Don to the east, particularly from the Lower Volga–Ural area (especially the Samara region), which – based on the center of expansion of late Repin settlers – may be depicting an artificially high Z2103-distribution of the whole Yamna community.
    repin-expansion-khvalynsk-cultures
    Repin expansion into the Volga–Ural region from ca. 3500/3400 BC. Map made by me based on maps and data from Morgunova (2014, 2016). Lopatino is marked with number 64.
    • Yamna sample I0443, R1b-L23 (Y410+, L51-), ca. 3300-2700 BCE from Lopatino II, points to an intermediate subclade between L23 and L51, near one of the supposed late Repin sites (based on kurgan burials with late Repin cultural traits) in the Samara region.
    • Other Balkan cultures potentially unrelated to the Yamna expansion also show Z2103 (and not only L51) subclades, like I3499 (ca. 2884-2666 calBC), of the Vučedol culture, from Beli Manastir-Popova zemlja, which points to the infiltration of Yamna peoples in other cultures. In any case, the appearance of R1b-L23 subclades in the region happens only after the Yamna expansion ca. 3100 BC, probably through intrusions into different neighbouring regions, if these Balkan cultures are not directly derived from Yamna settlements (which is probably the case of the Csepel Bell Beaker or early Nagýrev sample, see above).
    • The diversity of haplogroups found in or around the Carpathian Basin in Late Chalcolithic / Early Bronze Age samples, including L151(xP312, xU106), P312, U106, Z2103, makes it the most likely sink of Yamna settlers, who spread thus with expanding family clans of different R1b-L23 subclades.
    • Even though some Yamna vanguard groups are known to have expanded up to Saxony-Anhalt before ca. 2700 BC, haplogroup Z2103 seems to be restricted to more eastern regions, which suggests that R1b-L51 was already successful among expanding West Yamna clans in Hungary, which gave rise only later to expanding East Bell Beakers (overwhelmingly of L151 subclades). The source of R1b-L51 and L151 expansion over Z2103 must lie therefore in the West Yamna period, and not in the Bell Beaker expansion.
    indo-european-uralic-migrations-yamna-gac
    Yamna migrants ca. 3300-2600. Most likely site of admixture with GAC circled in red.
    • The R1b-Z2103 found in Poltavka, Catacomb, and to the south point to a late migration displacing the western R1b-L51, only after the late Repin expansion. This is also seen in the steppe ancestry and R1b-Z2103 south of the Caucasus, in Hajji Firuz, which points to this route as a potential source of the supposed “Earliest Proto-Indo-Iranian” (the mariannu term) of the Near East. A similar replacement event happened some centuries later with expanding R1a-Z93 subclades from the east wiping out haplogroup R1b-Z2103 from the Pontic-Caspian steppe.
    • Many ancient samples from Khvalynsk, Northern Caucasus, Yamna, or later ones are reported simply as R1b-M269 or L23, without a clear subclade, so the simplistic ‘Yamna–Z2103’ picture is not real: if one takes into account that Z2103 might have been successful quite early in the eastern region, it is more likely to obtain a successful Y-SNP call of a Z2103 subclade in the Volga–Ural region than a xZ2103 one.
    • There are some modern samples of R1b-L51 in eastern Europe and Asia, whose common simplistic attribution to “late expansions” is usually not substantiated; and also ancient R1b-L51 samples might be confirmed soon for Asia.
    • ‘Western’ features described by archaeologists for West Yamna settlers, associated with Kemi Oba and southern Yamna groups in the North Pontic area – like rich burials with anthropomorphic stelae and wagons – are actually absent in burials from settlers beyond Bulgaria, which does not support their affiliation with these local steppe groups of the Black Sea. Also, a mix with local traditions is seen accross all Early Yamna groups of the Pontic-Caspian steppe, and still genetics and common cultural traits point to their homogeneization under the same patrilineal clans expanding continuously for centuries. The maintenance of local traditions (as evidenced by East Bell Beakers in Iberia related to Iberian Proto-Beakers) is often not a useful argument in genetics, especially when the female population is not replaced.
    yamna-settlers-hungary
    Yamna settlers in the Great Pannonian Plain, showing only kurgans of Hungary ca. 2950-2500 BC. Yamna Hungary was one of the biggest West Yamna provinces. From Hórvath et al. (2013).

    Conclusion

    This is what we know, using linguistics, archaeology, and genetics:

    • Middle Proto-Indo-European expanded with Khvalynsk-Novodanilovka after ca. 4800 BC, with the first Suvorovo settlements dated ca. 4600 BC.
    • Archaic Late Proto-Indo-European expanded with late Repin (or Volga–Ural settlers related to Khvalynsk, influenced by the Repin expansion) into Afanasevo ca. 3500/3400 BC.
    • Late Proto-Indo-European expanded with Early Yamna settlers to the west into central Europe and the Balkans ca. 3100 BC; and also to the east (as Pre-Proto-Indo-Iranian) into the southern Urals ca. 2600 BC.
    • North-West Indo-European expanded with Yamna Hungary -> East Bell Beakers, from ca. 2500 BC.
    • Proto-Indo-Iranian expanded with Sintashta, Potapovka, and later Andronovo and Srubna from ca. 2100 BC.

    It seems that the subclades from Khvalynsk ca. 4250-4000 BC were wrongly reported – like those of Narasimhan et al. (2018). However, even if they are real and YFull estimates have to be revised, and even if the split had happened before the expansion of Suvorovo-Novodanilovka, the most likely origin of R1b-L51 among Bell Beakers will still be the expansion of late Repin / Early Yamna settlers, and that is what ancient DNA samples will most likely show, whatever the social or political consequences.

    The only relevance of the finding of R1b-L51 in one place or another – especially if it is found to be a remnant of a Middle PIE expansion coupled with centuries of admixture and interaction in the Carpathian Basin – is the potential influence of an archaic PIE (or non-IE) layer on the development of North-West Indo-European in Yamna Hungary -> East Bell Beaker. That is, more or less like the Uralic influence related to the appearance of R1a-Z93 among Proto-Indo-Iranians, of R1a-Z284 among Pre-Germanic peoples, and of R1a-Z282 among Balto-Slavic peoples.

    I think there is little that ancient DNA samples from West Yamna could add to what we know in general terms of archaeology or linguistics at this point regarding Late PIE migrations, beyond many interesting details. I am sure that those who have not attributed some random 6,000-year-old paternal ancestor any magical (ethnic or nationalist) meaning are just having fun, enjoying more and more the precise data we have now on European prehistoric populations.

    As for those who believe in magical consequences of genetic studies, I don’t think there is anything for them to this quest beyond the artificially created grand-daddy issues. And, funnily enough, those who played (and play) the ‘neutrality’ card to feel superior in front of others – the “I only care about the truth”-type of lie, while secretly longing for grandpa’s ethnolinguistic continuity – are suffering the hardest fall.

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