Ancient DNA study reveals HLA susceptibility locus for leprosy in medieval Europeans

Open access Ancient DNA study reveals HLA susceptibility locus for leprosy in medieval Europeans, by Krause-Kyora et al., Nature Communications (2018)

Abstract:

Leprosy, a chronic infectious disease caused by Mycobacterium leprae (M. leprae), was very common in Europe till the 16th century. Here, we perform an ancient DNA study on medieval skeletons from Denmark that show lesions specific for lepromatous leprosy (LL). First, we test the remains for M. leprae DNA to confirm the infection status of the individuals and to assess the bacterial diversity. We assemble 10 complete M. leprae genomes that all differ from each other. Second,

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Haplogroup R1b-L51 in Khvalynsk samples from the Samara region dated ca. 4250-4000 BC

A commenter in a previous post left a reference to an oral communication by Aleksander Khokhlov – shared in a Russian forum on genetics – , from the XIV Conference on Samaran Archaeology, 27-28^th January 2018 (still publicized in the Samaran Archaeological Society).

NOTE. You may know Khokhlov as a palaeoanthropologist, part of the Samara Valley project, like David W. Anthony. See the project referenced here, or their recently published book.

Here is my translation of the reported summary (emphasis mine):

Khokhlov, A.A. Preliminary results of anthropological and genetic studies of materials of the Volga-Ural

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Domestication spread probably via the North Pontic steppe to Khvalynsk… but not horse riding

Interesting paper Excavation at the Razdolnoe site on the Kalmius river in 2010, by N. Kotova, D. Anthony, D. Brown, S. Degermendzhy, P. Crabtree, In: Archaeology and Palaeoecology of the Ukrainian Steppe / IA NAS of Ukraine, Kyiv 2017.

Nothing new probably to those who have read Anthony (2007), but this new publication of his research on the North Pontic region seems to contradict recent papers which cast doubts on the presence of early forms of domestication in the North Pontic steppe, and would reject thus also the arrival of domestication to Khvalynsk from a southern route.… Read the rest “Domestication spread probably via the North Pontic steppe to Khvalynsk… but not horse riding”

The Lower Danube during the Eneolithic, and the potential Proto-Anatolian community

Local cultural settings and transregional phenomena: on the impact of a funerary ritual in the Lower Danube in the 4th millennium BC, by Frinculeasa & Mirea, In: Buletinul Muzeului Judetean Teleorman, Seria Arheologie, 9, 2017, p. 75-116.

Interesting excerpts (emphasis mine):

1. In the area under discussion, around 4300-4200 BC – a chronological segment marking the evolutionary peak of ‘Old Europe’ (Anthony 2007: 225), represented by the Cucuteni A/ Tripolie BI, Aldeni-Bolgrad, Gumelniţa-Karanovo VI cultures – the first tumular burials appeared (Govedarica 2016: 85). However, flat burials, marked by the existence of some allogeneous elements in the local

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Rakhigarhi samples from the Indus Valley Civilisation will support the conclusions of Narasimhan et al. (2018)

New article on The Caravan, Indus Valley People Did Not Have Genetic Contribution From The Steppes: Head Of Ancient DNA Lab Testing Rakhigarhi Samples, by Hartosh Singh Val.

Niraj Rai, head of the DNA Laboratory where the samples from the Harappan site of Rakhigarhi in Haryana are being analysed, has this to say:

It will show that there is no steppe contribution to the Indus Valley DNA.

The Indus Valley people were indigenous, but in the sense that their DNA had contributions from near eastern Iranian farmers mixed with the Indian hunter-gatherer DNA, that is still reflected in the

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An accident at work? Traumatic lesions in the skeleton of a Yamna “wagon driver”

Interesting article posted now free at ResearchGate:

An accident at work? Traumatic lesions in the skeleton of a 4th millennium BCE “wagon driver” from Sharakhalsun, Russia, by Tucker et al. HOMO – Journal of Comparative Human Biology (2017).

Excerpts (emphasis mine):

The cemetery site of Sharakhalsun 2 is located approximately 160 km east of Stavropol in the north Caucasus region of Russia [see featured image]. It comprises a linear alignment of mounds situated on the right side of the river Kalaus near the Manych water reserve. This area was a focus of burial activity from the late 5th

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David Reich on social inequality and Yamna expansion with few Y-DNA subclades

Interesting article from David Reich that I had missed, at Nautilus, Social Inequality Leaves a Genetic Mark.

It explores one of the main issues we are observing with ancient DNA, the greater reduction in Y-DNA lineages relative to mtDNA lineages, and its most likely explanation (which I discussed recently).

Excerpts interesting for the Indo-European question (emphasis mine):

Gimbutas’s reconstruction has been criticized as fantastical by her critics, and any attempt to paint a vivid picture of what a human culture was like before the period of written texts needs to be viewed with caution. Nevertheless, ancient DNA data

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Consequences of O&M 2018 (III): The Balto-Slavic conundrum in Linguistics, Archaeology, and Genetics

This is part of a series of posts analyzing the findings of the recent Nature papers Olalde et al.(2018) and Mathieson et al.(2018) (abbreviated O&M 2018).

The recent publication of Narasimhan et al. (2018) has outdated the draft of this post a bit, and it has made it at the same time still more interesting.

While we wait for the publication of the dataset (and the actual Y-DNA haplogroups and precise subclades with the revision of the paper), and as we watch the wrath of Hindu nationalists vented against the West (as if the steppe was in Western Europe) … Read the rest “Consequences of O&M 2018 (III): The Balto-Slavic conundrum in Linguistics, Archaeology, and Genetics”

Early Indo-Iranian formed mainly by R1b-Z2103 and R1a-Z93, Corded Ware out of Late PIE-speaking migrations

The awaited, open access paper on Asian migrations is out: The Genomic Formation of South and Central Asia, by Narasimhan et al. bioRxiv (2018).

Abstract:

The genetic formation of Central and South Asian populations has been unclear because of an absence of ancient DNA. To address this gap, we generated genome-wide data from 362 ancient individuals, including the first from eastern Iran, Turan (Uzbekistan, Turkmenistan, and Tajikistan), Bronze Age Kazakhstan, and South Asia. Our data reveal a complex set of genetic sources that ultimately combined to form the ancestry of South Asians today. We document a southward spread of

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