New preprint by the Jena-Reich labs, The Genomic Formation of Human Populations in East Asia, by Wang et al. bioRxiv (2020).
Interesting excerpts (emphasis mine):
Mongolia Neolithic cluster
The three most ancient individuals of the Mongolia ‘East’ cluster are from the Kherlen River region of eastern Mongolia (Tamsag-Bulag culture) and date to 6000-4300 BCE (this places them in the Early Neolithic period, which in Northeast Asia is defined by the use of pottery and not by agriculture). These individuals are genetically similar to previously reported Neolithic individuals from the cis-Baikal region and have minimal evidence of West Eurasian-related admixture
… Read the rest “Yamnaya-like Chemurchek links Afanasievo with Iron Age Tocharians”
The genotypes from Human auditory ossicles as an alternative optimal source of ancient DNA, by Sirak et al. Genome Res. (2020), have been finally published by the Reich Lab, so we can get a sneak peek into what’s coming in future papers about the origins of R1a-rich Proto-Corded Ware and R1b-rich Italo-Venetic peoples.
NOTE. To avoid adding potential errors, I have merged the Reich Lab’s Curated Dataset (v. 42.4, March 1 2020) with these new samples before performing the qpAdm analyses. If you find something different with your files, you should probably check out this simple setting first. … Read the rest “Fully Steppe-like Proto-Corded Ware Late Trypillians”
Recently, the preprint by Sirak et al. biorXiv (2019), Human auditory ossicles as an alternative optimal source of ancient DNA, was published in Genome Res. (2020), and the corresponding samples were finally uploaded to ENA.
I have been trying to get my hands on sample GLAV_14, a male from the Late Eneolithic site Glăvăneştii Vechi, classified as Romania Bronze Age (ca. 3500-3000 BC), mtDNA T1a1, referenced as investigated first in the study:
Haas N, Maximilian K. 1958. Anthropological study of the human bones from graves with ochre from Glăvăneștii Vechi, Corlăteni and Stoicani Cetățuie. Soviet Anthropology 4,
… Read the rest “Earliest R1a-Z93…from Late Trypillia in the Podolian-Volhynian Upland!”
The previous post showed the potential use of TreeToM to visualize ancient DNA samples in maps together with their Y-DNA phylogenetic trees. I have written Newick trees for Y-chromosome haplogroups R1b-L388 (encompassing R-V1636 and R-P297, which in turn split into R-M73 and R-M269), R1a, and N.
I have reviewed some of the BAM files from my previous bulk analyses with YLeaf v.2, to add information that I had not previously included in the All Ancient DNA Dataset, and which might be relevant to the proper depiction of phylogenetic trees; in particular, positive and negative SNPs potentially distinguishing archaic… Read the rest “Ancient phylogeography: spread of haplogroups R1b, R1a and N”
I have compiled for two years now the reported Y-DNA and mtDNA haplogroups of ancient DNA samples published, including also SNPs from analysis of the BAM files by hobbyists.
Here is a video with a timeline of the evolution of Indo-European speakers, according to what is known today about reconstructed languages, prehistoric cultures and ancient DNA:
NOTE. The video is best viewed in HD 1080p (1920×1080) with a display that allows for this or greater video quality, and a screen big enough to see haplogroup symbols, i.e. tablet or greater. The YouTube link is here. The … Read the rest “The expansion of Indo-Europeans in Y-chromosome haplogroups”
The recent update on the Indo-Anatolian homeland in the Middle Volga region and its evolution as the Indo-Tocharian homeland in the Don–Volga area as described in Anthony (2019) has, at last, a strong scientific foundation, as it relies on previous linguistic and archaeological theories, now coupled with ancient phylogeography and genomic ancestry.
There are still some inconsistencies in the interpretation of the so-called “Steppe ancestry”, though, despite the one and a half years that have passed since we first had access to the closest Pontic–Caspian steppe source populations. Even my post “Steppe ancestry” step by step from a year ago … Read the rest ““Steppe ancestry” step by step (2019): Mesolithic to Early Bronze Age Eurasia”
Two new interesting papers concerning Corded Ware and Bell Beaker peoples appeared last week, supporting yet again what is already well-known since 2015 about West Uralic and North-West Indo-European speakers and their expansion.
Below are relevant excerpts (emphasis mine) and comments.
#UPDATE (27 OCT 2019): I have updated Y-DNA and mtDNA maps of Corded Ware, Bell Beaker, EBA, MBA, and LBA migrations. I have also updated PCA plots, which now include the newly reported samples and those from the Tollense valley, and I have tried some qpAdm models (see below).
I. Corded Ware and
… Read the rest “Corded Ware and Bell Beaker related groups defined by patrilocality and female exogamy”
I have recently written about the spread of Pre-Yamnaya or Yamnaya ancestry and Corded Ware-related ancestry throughout Eurasia, using exclusively analyses published by professional geneticists, and filling in the gaps and contradictory data with the most reasonable interpretations. I did so consciously, to avoid any suspicion that I was interspersing my own data or cherry picking results.
Now I’m finished recapitulating the known public data, and the only way forward is the assessment of these populations using the available datasets and free tools.
Understanding the complexities of qpAdm is fairly difficult without a proper genetic and statistical background, which I … Read the rest “Bell Beakers and Mycenaeans from Yamnaya; Corded Ware from the forest steppe”