RISE1.SG, R1b from Poland CWC, a likely mislabelled Balto-Slav

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When I started ruminating in 2016 over the apparent differences between populations that kept the two-velar distinction of Indo-Tocharian, and the only two unrelated dialectal groups that showed a strong satemization trend, I believed that – much like in modern times – there would be no clear-cut division in terms of ancestry or Y-DNA haplogroups between neighbouring forest-steppe and steppe populations.

The answer to the question of interacting ethnolinguistic groups had to lie, as everything else, on the investigation of fine-scale population movements that must have put Uralic-speaking peoples as the main substratum of Balto-Slavic and Indo-Iranian.

Still, … Read the rest “RISE1.SG, R1b from Poland CWC, a likely mislabelled Balto-Slav”

mtDNA, lactase persistence, and admixr for ADMIXTOOLS

The following are some recent developments and updates:

I. Ancient DNA Dataset version 2

I.1. Accurate mtDNA haplogroups

I was meaning to update the mtDNA part of the Ancient DNA Dataset, and finally found some time to review FTDNA and YFull nomenclature (including hyperlinks), as well as those SNP calls from published samples found in YFull’s MTree. So, if you are interested in studies of mtDNA phylogeography, I think the data is now accurate and much more useful.

Given the number of columns and the size of the files, I have decided to post shorter standard versions, by … Read the rest “mtDNA, lactase persistence, and admixr for ADMIXTOOLS”

qpAdm best practices and common pitfalls

The recently published preprint Assessing the Performance of qpAdm, by Harney, Patterson, Reich, & Wakeley at bioRxiv (2020) offers some interesting clues about what previous papers using qpAdm might have done right, and – more importantly – what they might have done wrong.

Since it doesn’t make much sense to repeat what this open access paper says within quotes, I will try to use short sentences or rework them to sum it up, illustrating best practices and common pitfalls with what I believe are corresponding examples with Steppe-related populations to date, with an emphasis on Bell Beakers. Most … Read the rest “qpAdm best practices and common pitfalls”