It explores one of the main issues we are observing with ancient DNA, the greater reduction in Y-DNA lineages relative to mtDNA lineages, and its most likely explanation (which I discussed recently).
Excerpts interesting for the Indo-European question (emphasis mine):
Gimbutas’s reconstruction has been criticized as fantastical by her critics, and any attempt to paint a vivid picture of what a human culture was like before the period of written texts needs to be viewed with caution. Nevertheless, ancient DNA data
We report genomic data from the earliest CW individuals to date [show] that CW was widespread across Bohemia by 2900 BCE. The early radiocarbon dates are also supported by these individuals’ genetic profiles, who occupy the most extreme positions on PC2, as expected under a scenario of the earliest CW being migrants from the east who mixed with locals, resulting in intermediate PC2 positions in later generations.
At least three major genetic changes have been described to date involving the Lena and Kolyma regions in East Siberia, and all are probably associated with some of the archaeological and linguistic developments that led to the known Early Modern distribution of languages in the Russian Far East and in Northern America.
The Reich Lab has recently pre-published high quality shotgun sequencing data from 216 ancient individuals within the framework of the Allen Ancient Genome Diversity Project / John Templeton Ancient DNA Atlas. Metadata for the 216 genomes are available here.
Their median coverage is 4.9x, and among them there are 50 high coverage genomes (17-36x), but there are also samples with a coverage similar to the previously published ones.
Object-ID: I am now using whenever possible the Master-ID; Version-ID for a quick identification of the ‘best’ sample to include in SmartPCA or ADMIXTURE runs; and Index as a key with a unique reference number for each sample. That should make for enough stable references for any external tool to use the data.
I noticed this interesting slide called “Caught red-handed”, at approximately 45m 17s, where David Reich asserts that sampled Corded Ware populations had many “close cousins” with Yamnaya-related populations “within generations”. The method could also be used, always according to Reich, to identify “who the Yamnaya mixed with to form groups like Corded Ware”.
NOTE. Notice also the the number of new sampled individuals from Khvalynsk, Ekaterinovka, and new Yamnaya groups from Chelyabinsk, Urals, Volga, Don, Moldova, and Romania.
Information below is taken from the preprint and from the latest version of the Reich Lab’s Allen Ancient DNA Resource (AADR). Information about the three published Khvalynsk samples is taken from Mathieson et al. Nature (2015) supplementary materials, and each ID features a different font color in the text below for clarity’s sake.