Y-SNP calls for Narasimhan (2019): The formation of human populations in South

Home Miscellanea Population Genomics Y-SNP calls for Narasimhan (2019): The formation of human populations in South

Viewing 0 reply threads
  • Author
    Posts
    • #31442
      Carlos Quiles
      Keymaster

      Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., … & Kim, A. M. (2019). The formation of human populations in South and Central Asia. Science, 365(6457), eaat7487.

      https://doi.org/10.1126/science.aat7487

      Abstract:

      Ancient DNA has allowed us to begin tracing the history of human movements across the globe. Narasimhan et al. identify a complex pattern of human migrations and admixture events in South and Central Asia by performing genetic analysis of more than 500 people who lived over the past 8000 years (see the Perspective by Schaefer and Shapiro). They establish key phases in the population prehistory of Eurasia, including the spread of farming peoples from the Near East, with movements both westward and eastward. The people known as the Yamnaya in the Bronze Age also moved both westward and eastward from a focal area located north of the Black Sea. The overall patterns of genetic clines reflect similar and parallel patterns in South Asia and Europe.

      Accession number: PRJEB32466

      Batch Y-chromosome SNP Calls with Yleaf v. 2.3 from FASTQ files, bwa-mem with hg38 reference, and parameters r=1, q=0, b=0.

      Google Drive.

      Haplogroup.info.

      The following is a list of automated Y-DNA haplogroup predictions obtained with Clean tree v2:

      WARNING: Please note that the haplogroup prediction algorithm works best with modern DNA, and its strict requirements make the prediction rather impractical for ancient DNA – in fact, males usually turn out to have not enough quality for a reliable prediction.

      If anything, positive haplogroup predictions (especially under R1b and I2) will normally turn out to be wrong because they are based on few reads, due to the sample being either a) female or b) low coverage.

      The usual process for checking out Y-chromosome haplogroups in ancient DNA samples is as follows:

      1. Select the male individual you want to check out for in the Ancient DNA Dataset.
      2. Look up its library ID (object-ID) at ENA Browser search form (top right) to obtain the accession number(s) for the available sample(s) corresponding to that individual.
      3. Look for files obtained with Yleaf for that accession number(s); more specifically, look for individual Derived and Ancestral SNPs in the ACCESSION_NUMBER.out or ACCESSION_NUMBER.out.csv documents.

      When in doubt about a specific sample, you can ask a question in this thread.

      ERR3324535 R1b1a1b1a1 R-CTS7650*(xFGC13260,S378,Y10790,S1746,L1231,L356,L192.1,FGC37083) 684311 783 1.0 1.0 1.0 1.0
      ERR3325040 R1a1a1b2a~ R-F3568*(xAM00480,Y20653,Y2632,Y19831,FGC22482,Y36353,YP1127,YP1553,Y12480,S18885,CTS6,FGC131,YP5937,BY27618,Y39,CTS2887) 1074987 4308 1.0 1.0 1.0 1.0
      ERR3324607 R1b1a1b1 R-L23*(xL884.2,FGC33321,S1746,S22641,L1231,Z49,CTS1595,CTS2501,L743,CTS8358,FGC5637,BY357,L130) 412568 466 1.0 1.0 1.0 1.0
      ERR3324870 NA NA 4194623 18982 0 0 0 0
      ERR3324630 NA NA 8686 47 0 0 0 0
      ERR3324953 NA NA 238868 456 0.0 1.0 1.0 0.0
      ERR3324974 R1b1a1b R-CTS12478/etc*(xFGC36479,L1231,L356,S6154,FGC5596,S279,A6464,FGC5654,CTS8704,L130,FGC58892,FGC11355,Z2248,FGC37092) 699287 884 1.0 1.0 1.0 1.0
      ERR3324988 NA NA 21910 48 0 0 0 0
      ERR3324756 NA NA 15650 77 0.0 1.0 1.0 0.0
      ERR3324949 R1a~ R-L457/etc*(xY177,YP4216) 1295091 6109 1.0 1.0 1.0 1.0
      ERR3324595 NA NA 266658 293 0 0 0 0
      ERR3324851 NA NA 3007218 13690 0 0 0 0
      ERR3324639 NA NA 878549 719 0.0 0.0 1.0 1.0
      ERR3324568 NA NA 3737755 17955 0.0 0.0 1.0 0.0
      ERR3324614 NA NA 4865411 18442 0 0 0 0
      ERR3325066 NA NA 326360 411 0 0 0 0
      ERR3324759 NA NA 872624 957 0 0 0 0
      ERR3324616 R1b1a1b1a1a1c2b2b R-S1743 364526 548 1.0 1.0 1.0 1.0
      ERR3324715 R1b1a1b1 R-L23*(xL884.2,S499,S22641,L1231,L356,L564,AM01878) 812924 905 1.0 1.0 1.0 1.0
      ERR3324631 NA NA 9595 35 0 0 0 0
      ERR3324895 NA NA 2755000 15277 0.0 0.0 1.0 1.0
      ERR3324645 NA NA 238100 308 0 0 0 0
      ERR3324810 NA NA 581494 682 0 0 0 0
      ERR3324555 NA NA 694613 663 0 0 0 0
      ERR3324637 NA NA 46217 118 0 0 0 0
      ERR3324911 NA NA 157759 193 0 0 0 0
      ERR3324840 R1b1a1b R-PF6436*(xL884.2,FGC13260,Y10790,Y7369,S1743,FGC401,L1231,L356,L192.1,FGC37092) 1105045 1315 1.0 1.0 1.0 1.0
      ERR3325025 NA NA 243411 189 0 0 0 0
      ERR3324544 R1b1a1b1b R-S20902/etc*(xL943,L277.1,CTS7822) 4462376 20827 1.0 1.0 1.0 1.0
      ERR3324941 R1b R-CTS46*(xBY15600,CTS12972,BY15360,Y24710,BY14575) 722533 1180 1.0 1.0 1.0 1.0
      ERR3324736 NA NA 3229728 16181 0.0 0.0 1.0 1.0
      ERR3324636 NA NA 6176 25 0 0 0 0
      ERR3324670 R1a1a1b2a2a3~ R-S23592*(xFGC48759,YP1559,YP1353) 1051697 5736 1.0 1.0 1.0 1.0
      ERR3324652 NA NA 483905 699 0 0 0 0
      ERR3325068 NA NA 47236 71 0 0 0 0
      ERR3324867 NA NA 3568345 16936 0 0 0 0
      ERR3324956 NA NA 17451 23 0 0 0 0
      ERR3324921 Q1 Q-M1169/etc*(xF3243,CTS11634) 1378603 5247 1.0 1.0 1.0 1.0
      ERR3324880 NA NA 1126042 1220 0 0 0 0
      ERR3325044 R1a R-L63*(xY177,YP4290) 1801671 7369 1.0 1.0 1.0 1.0
      ERR3325010 NA NA 46342 55 0 0 0 0
      ERR3324662 R1a1 R-M459*(xYP5531,FGC21097,Y31447,S2852,YP360,YP6489,YP5457,YP5462,YP1014,YP6043,YP4126,FGC10012,AM01875,YP569,YP4482,BY30795,FGC45975,CTS3402,YP1148,S443,YP5876,YP5957,L657.1,Y940,SUR86,FGC10205,FGC22471,Y36347,YP6331,YP5906,YP1127,M4367,FGC31687,YP1358,F1345,Y58,Z654,Y20788,Y34301,YP5593,YP1335) 1252506 7687 1.0 1.0 1.0 1.0
      ERR3324971 NA NA 3035591 13931 0.0 0.0 1.0 1.0
      ERR3325017 NA NA 44428 37 0 0 0 0
      ERR3324760 NA NA 738619 734 0 0 0 0
      ERR3324812 NA NA 1601923 7694 0 0 0 0
      ERR3324883 NA NA 147661 531 0.0 1.0 1.0 0.0
      ERR3325036 R1b R-CTS46*(xA702,BY14374) 505353 1272 1.0 1.0 1.0 1.0
      ERR3324891 R1b1a1b R-L150.1*(xS1743,S22641,L1231,L356,L564) 564749 473 1.0 1.0 1.0 1.0
      ERR3324633 NA NA 9470 8 0 0 0 0
      ERR3324603 NA NA 127157 249 0.0 1.0 1.0 0.0
      ERR3324916 NA NA 1051922 1039 0 0 0 0
      ERR3324771 R1b1a1b R-PF6436/etc*(xZ160,Y10790,FGC17430,S22641,L1231,L356,L564,Z2248,L644,FGC37092,PF7558) 755105 669 1.0 1.0 1.0 1.0
      ERR3324927 NA NA 687494 485 0 0 0 0
      ERR3324676 R1a R-L62/etc*(xY177,Y19144) 3232134 16163 1.0 1.0 1.0 1.0
      ERR3324581 NA NA 659793 874 0 0 0 0
      ERR3325062 R1a1a1b2a2a1 R-Z2123*(xKMS2,Y18102,YP4911,Y19831,Y13524,FGC22471,YP520,YP5906,FGC23228,Y19715) 3931054 17876 1.0 1.0 1.0 1.0
      ERR3324842 NA NA 148212 336 0 0 0 0
      ERR3324989 NA NA 27141 35 0 0 0 0
      ERR3324952 NA NA 2018325 12076 0 0 0 0
      ERR3324689 NA NA 3379838 16762 0.0 0.0 1.0 1.0
      ERR3324585 R1b R-CTS2134/etc*(xL754,PH1165) 2610466 13773 1.0 1.0 1.0 1.0
      ERR3325026 NA NA 551725 436 0 0 0 0
      ERR3324588 R1b1a1b1a1a1c R-S263*(xCTS11549) 69426 126 1.0 1.0 1.0 1.0
      ERR3324886 NA NA 3033316 15187 0.0 0.0 1.0 1.0
      ERR3324730 NA NA 23208 18 0 0 0 0
      ERR3324548 R1b1a1b1b R-CTS1078/etc*(xL277.1,CTS7556) 2703310 11028 1.0 1.0 1.0 1.0
      ERR3324987 NA NA 2993441 14679 0.0 0.0 1.0 0.0
      ERR3324985 NA NA 4181163 18994 0.0 0.0 1.0 1.0
      ERR3324862 NA NA 670463 898 0 0 0 0
      ERR3324612 NA NA 3931329 17614 0.0 0.0 1.0 1.0
      ERR3324591 NA NA 100241 162 0 0 0 0
      ERR3324783 NA NA 16176 49 0 0 0 0
      ERR3324900 NA NA 789380 866 0 0 0 0
      ERR3325022 NA NA 194176 212 0 0 0 0
      ERR3324926 NA NA 2964202 11606 0 0 0 0
      ERR3324738 NA NA 114356 96 0 0 0 0
      ERR3324752 G2a2b1 G-M3249*(xBY74557,L645,FT34613) 81525 330 1.0 1.0 1.0 1.0
      ERR3324657 NA NA 952510 6086 0.0 0.0 1.0 1.0
      ERR3324547 NA NA 3742427 17199 0.0 0.0 1.0 1.0
      ERR3324602 NA NA 1142855 3843 0 0 0 0
      ERR3325019 NA NA 237068 286 0 0 0 0
      ERR3324680 NA NA 253846 309 0 0 0 0
      ERR3324918 R1a1 R-Page65.2*(xYP5531,S23297,S2856,YP5517,FGC41412,FGC9986,PF7525,S205,FGC4501,Y10806,L448,S345,FGC28668,YP1370,YP3907,YP718,Y17491,YP5969,AM00483,Y628,YP4924,Y2633,Y19841,FGC10205,FGC22493,YP520,YP5906,FGC23228,YP5275,FGC59421,M12291,S23592,CTS8448,FGC111,YP5938,YP4770,Y2169,FGC30901,CTS9557,YP1506,Y20788,Y34292,YP5587,Y8857,YP1273) 2697506 10232 1.0 1.0 1.0 1.0
      ERR3325024 NA NA 683441 670 0 0 0 0
      ERR3325008 NA NA 88616 100 0 0 0 0
      ERR3325015 NA NA 428810 372 0 0 0 0
      ERR3324659 NA NA 725774 681 0 0 0 0
      ERR3324563 R1b1a1b R-PF6436/etc*(xL884.2,S499,S22641,FGC419,L1231,L356,L192.1,AM01878,FGC37092,BY16694) 1041728 1219 1.0 1.0 1.0 1.0
      ERR3324545 NA NA 4916346 21980 0.0 0.0 1.0 1.0
      ERR3324907 E1b1b E-CTS10513/etc*(xCTS4256,CTS11467,Z21029,PF2039,Y20386) 79788 211 1.0 1.0 1.0 1.0
      ERR3324831 NA NA 1148567 1288 0.0 0.0 1.0 1.0
      ERR3325046 NA NA 6450077 24844 0 0 0 0
      ERR3325057 R1 R-P233*(xS2856,L365,FGC10190,YP5921,YP613,YP1169,S6241,YP5235,Y908,Y34256,FGC59402,YP1546,FGC30891,YP5056,YP4164,PF6459,PF6312,Y33147) 103260 399 1.0 1.0 1.0 1.0
      ERR3324575 NA NA 899809 3856 0.0 0.0 1.0 0.0
      ERR3324551 R1b1a1b1b R-Z2105*(xCTS1843) 1307312 6352 1.0 1.0 1.0 1.0
      ERR3324973 NA NA 2699007 12037 0.0 0.0 1.0 1.0
      ERR3324816 J2 J-PF4935/etc*(xCTS128,Z538) 754662 3864 1.0 1.0 1.0 1.0
      ERR3324577 NA NA 186427 910 0.0 0.0 1.0 1.0
      ERR3324968 NA NA 1577111 7942 0 0 0 0
      ERR3324638 NA NA 573094 445 0.0 1.0 1.0 0.0
      ERR3324994 NA NA 807214 3243 0 0 0 0
      ERR3324815 NA NA 2311648 11619 0.0 0.0 1.0 1.0
      ERR3324951 NA NA 438488 584 0 0 0 0
      ERR3324819 R2a2b1 R-PF7499/etc*(xFGC12727,Z29280,Y12093,Z29156) 2669309 13772 1.0 1.0 1.0 1.0
      ERR3324554 NA NA 2730442 12914 0.0 0.0 1.0 1.0
      ERR3324950 NA NA 81632 172 0 0 0 0
      ERR3324915 NA NA 1033017 990 0 0 0 0
      ERR3324992 NA NA 473729 565 0 0 0 0
      ERR3324553 R1b1a1b1b R-Z2105 1045335 3562 1.0 1.0 1.0 1.0
      ERR3324648 NA NA 4198164 17695 0.0 0.0 1.0 1.0
      ERR3324848 NA NA 2146301 9213 0 0 0 0
      ERR3324622 NA NA 4501 4 0 0 0 0
      ERR3325051 NA NA 243932 236 0 0 0 0
      ERR3325058 NA NA 456519 1570 0.0 0.0 1.0 1.0
      ERR3324802 NA NA 1043766 1336 0 0 0 0
      ERR3324817 L1a2 L-M2618/etc*(xZ5920,Y6267) 740310 3468 1.0 1.0 1.0 1.0
      ERR3324726 NA NA 169111 284 0 0 0 0
      ERR3324811 NA NA 155371 229 0.0 0.0 1.0 1.0
      ERR3324699 R2a R-F820/etc*(xFGC13192,FGC12582) 921848 3412 1.0 1.0 1.0 1.0
      ERR3325048 NA NA 293874 327 0 0 0 0
      ERR3324828 NA NA 1167984 1403 0.0 0.0 1.0 1.0
      ERR3324805 R1b1a1b1a1a1b1a1a R-S5757 646996 827 1.0 1.0 1.0 1.0
      ERR3324724 J1a2a~ J-AM01306/etc*(xZS9858,AM01343,FGC6029) 506706 1417 1.0 1.0 1.0 1.0
      ERR3324653 NA NA 2435454 10280 0.0 0.0 1.0 1.0
      ERR3324961 NA NA 447431 602 0 0 0 0
      ERR3324601 J2a J-CTS1085*(xPH4755,L88.2,Y6861,Y27475) 106042 416 1.0 1.0 1.0 1.0
      ERR3324587 NA NA 94644 93 0 0 0 0
      ERR3324984 NA NA 3705931 17463 0 0 0 0
      ERR3325006 NA NA 297527 253 0 0 0 0
      ERR3324765 NA NA 720916 991 0.0 1.0 1.0 0.0
      ERR3324717 NA NA 1791308 6733 0 0 0 0
      ERR3324761 NA NA 394410 423 0.0 1.0 1.0 0.0
      ERR3324998 NA NA 788983 823 0.0 0.0 1.0 1.0
      ERR3324675 R1a R-L62/etc*(xCTS7083,FGC9996,PF6161,YP569,Y1401,YP4356,FGC45975,CTS3607,S443,Y17491,YP5957,AM00479,Z2123,M12291,FGC48792,Y29558,YP1349,Y65081,S4576,Y41,FGC30891,YP5322,YP1506,Y20787,Y34299,YP5587,YP1055,Y12479,YP4214) 2692509 14474 1.0 1.0 1.0 1.0
      ERR3324579 NA NA 472517 566 0 0 0 0
      ERR3324818 NA NA 585891 2699 0 0 0 0
      ERR3324970 NA NA 15946 13 0 0 0 0
      ERR3324769 NA NA 962694 1123 0 0 0 0
      ERR3324885 NA NA 3080288 14895 0.0 0.0 1.0 1.0
      ERR3325071 NA NA 436828 1873 0 0 0 0
      ERR3324734 NA NA 3838167 19981 0 0 0 0
      ERR3325011 R1b1a1b R-PF6462*(xYSC0000054,Y10790,S22641,L1231,L356,L564,BY11894) 653673 597 1.0 1.0 1.0 1.0
      ERR3324764 NA NA 859109 1026 0.0 0.0 1.0 1.0
      ERR3324634 NA NA 51007 125 0 0 0 0
      ERR3324642 NA NA 70260 209 0 0 0 0
      ERR3324896 NA NA 2924537 15264 0.0 0.0 1.0 1.0
      ERR3324910 NA NA 192249 198 0 0 0 0
      ERR3324605 NA NA 941732 775 0 0 0 0
      ERR3324853 NA NA 1261446 4845 0 0 0 0
      ERR3324837 NA NA 381827 559 0 0 0 0
      ERR3324755 NA NA 512227 1801 0 0 0 0
      ERR3324565 NA NA 4474599 19762 0.0 0.0 1.0 1.0
      ERR3324820 NA NA 2229475 11499 0 0 0 0
      ERR3324844 NA NA 3121147 16235 0 0 0 0ERR3324559 NA NA 2166316 10117 0.0 0.0 1.0 1.0
      
      ERR3324898 NA NA 48289 141 0 0 0 0
      ERR3324836 NA NA 810742 954 0.0 0.0 1.0 1.0
      ERR3325003 NA NA 4084899 18562 0.0 0.0 1.0 1.0
      ERR3324925 NA NA 4118706 17735 0 0 0 0
      ERR3324768 NA NA 43865 58 0 0 0 0
      ERR3324824 R2a2b1 R-FGC12643*(xFGC22778,Y17754,Z29156) 238903 820 1.0 1.0 1.0 1.0
      ERR3324959 NA NA 603464 820 0 0 0 0
      ERR3324532 NA NA 171837 168 0 0 0 0
      ERR3324669 R1a R-L62/etc*(xM770,YP4145) 3747871 17716 1.0 1.0 1.0 1.0
      ERR3324618 NA NA 4683 4 0 0 0 0
      ERR3324673 NA NA 1212013 6119 0.0 0.0 1.0 1.0
      ERR3324742 NA NA 20982 35 0 0 0 0
      ERR3324735 NA NA 30373 169 0.0 1.0 1.0 0.0
      ERR3325043 NA NA 1655175 6213 0.0 1.0 1.0 0.0
      ERR3324694 NA NA 1096891 6537 0 0 0 0
      ERR3324701 NA NA 4291519 20170 0.0 0.0 1.0 1.0
      ERR3325042 R1a~ R-FGC32438/etc*(xM770,YP4182) 1375313 5045 1.0 1.0 1.0 1.0
      ERR3324789 R1b1a1b R-CTS12478*(xS263,L356,FGC19851,FGC7998,L743,A11313,BY404,FGC5782,PF7585) 238931 310 1.0 1.0 1.0 1.0
      ERR3324995 R1a1a1b2a2a1d7~ R-FGC22471*(xY36447,FGC22467) 1181968 7799 1.0 1.0 1.0 1.0
      ERR3324884 NA NA 2688657 14868 0 0 0 0
      ERR3325004 NA NA 4206242 18825 0.0 0.0 1.0 1.0
      ERR3325038 R1a1a1b2a R-F3105*(xL657.1,KMS2,Y935,Y20653,YP4974,Y19829,Y13524,FGC22471,YP524,YP5906,YP5271,FGC48776,YP1541,YP5505,F1345,YP648,FGC4547,Y38296) 1527095 5385 1.0 1.0 1.0 1.0
      ERR3324534 R1b1a1b1 R-L23*(xS263,L1231,L356,L459) 646435 663 1.0 1.0 1.0 1.0
      ERR3324583 NA NA 599000 705 0.0 1.0 1.0 0.0
      ERR3324632 NA NA 20701 32 0 0 0 0
      ERR3324897 NA NA 2300944 12689 0.0 0.0 1.0 1.0
      ERR3324580 R1b1a1b R-CTS1415^^/etc*(xYSC0000054,L884.2,FGC13260,S378,Z21,Y7369,S1743,S22641,Z222,L356,S6154,S279,FGC5637,FGC43488,FGC33060,FGC11355,L1315,L644,Z29785) 836766 887 1.0 1.0 1.0 1.0
      ERR3324552 R1b1a1b1b R-Z2105/etc*(xCTS1843) 1329484 7355 1.0 1.0 1.0 1.0
      ERR3325055 NA NA 2377934 10004 0.0 0.0 1.0 1.0
      ERR3324593 R1b1a1b R-PF6504*(xL884.2,S25234,Z83,L1231,L356,P66_2,A2288,CTS9881,FGC3222,A7911) 203781 305 1.0 1.0 1.0 1.0
      ERR3324939 NA NA 1056949 1074 0 0 0 0
      ERR3324538 R1b1a1b1a1 R-CTS7650*(xA564,L884.2,A112,Z160,Y10790,S1743,S22641,L1231,L356,S653,FGC7998,A11313,Z18064.1,Z17836,BY404,CTS8358,FGC5654,FGC36538,BY357,CTS8704,FGC33060,L130,FGC58883,L1315,A7911) 1082420 1175 1.0 1.0 1.0 1.0
      ERR3325023 NA NA 291503 308 0 0 0 0
      ERR3324531 R1b1a1b R-CTS1415^^/etc*(xS263,L1231,FGC5580,L743,S469,L1315) 583005 399 1.0 1.0 1.0 1.0
      ERR3324807 R1b1a1b1a1a2c1a5b1 R-CTS8704*(xFGC5782) 703628 975 1.0 1.0 1.0 1.0
      ERR3324960 NA NA 511785 738 0 0 0 0
      ERR3324542 NA NA 3681374 16661 0.0 0.0 1.0 1.0
      ERR3324964 NA NA 2914117 14736 0 0 0 0
      ERR3324700 NA NA 4343760 19625 0.0 0.0 1.0 1.0
      ERR3324976 NA NA 2965231 14866 0.0 0.0 1.0 1.0
      ERR3325065 NA NA 22631 91 0 0 0 0
      ERR3324849 NA NA 3320217 14928 0 0 0 0
      ERR3324906 NA NA 725904 4996 0.0 0.0 1.0 1.0
      ERR3324615 NA NA 4310324 19171 0.0 0.0 1.0 1.0
      ERR3324821 NA NA 1391143 6641 0 0 0 0
      ERR3324947 NA NA 1560437 8295 0.0 0.0 1.0 1.0
      ERR3324929 NA NA 1525127 6339 0.0 0.0 1.0 1.0
      ERR3324647 NA NA 1235690 1416 0.0 0.0 1.0 1.0
      ERR3325029 R1a~ R-CTS4509/etc*(xY177,YP4182) 1670200 5664 1.0 1.0 1.0 1.0
      ERR3324914 NA NA 122691 103 0 0 0 0
      ERR3325000 NA NA 1128820 1142 0 0 0 0
      ERR3324843 NA NA 1679225 9109 0.0 0.0 1.0 1.0
      ERR3324586 NA NA 153313 257 0 0 0 0
      ERR3324889 R1a1a1b2~ R-AM01870*(xAM00483,YP4922,FGC10207,FGC22471,FGC51149,FGC59403,YP1709,S23592,Z2478,FGC107,YP4770,YP637,Y60,FGC30903,YP1506,Y20788,Y34301) 894393 4054 1.0 1.0 1.0 1.0
      ERR3324855 NA NA 3426364 14588 0.0 0.0 1.0 1.0
      ERR3324975 NA NA 9638115 34138 0.0 0.0 1.0 1.0
      ERR3324909 NA NA 4328339 18712 0 0 0 0
      ERR3324938 R1b1a1b1a1 R-CTS7650*(xYSC0000054,L884.2,S378,S275,Y7369,S1743,L1231,L356,L192.1,Z2248) 742376 1021 1.0 1.0 1.0 1.0
      ERR3324934 R1b1a1b1 R-L23*(xFGC36479,L1231,L356,L192.1,Z2248) 1544936 1949 1.0 1.0 1.0 1.0
      ERR3324677 NA NA 3174731 16076 0.0 0.0 1.0 1.0
      ERR3325033 R1 R-CTS5611/etc*(xCTS7559,L278) 721321 2271 1.0 1.0 1.0 1.0
      ERR3325045 R1a~ R-CTS2443/etc*(xY177,YP5060,YP4230) 1449317 5741 1.0 1.0 1.0 1.0
      ERR3325013 NA NA 216043 207 0 0 0 0
      ERR3324560 R1b R-CTS46*(xA702,BY14578) 1699439 2175 1.0 1.0 1.0 1.0
      ERR3324666 R1b1a1b R-CTS1416^^/etc*(xL884.2,S499,S22641,L1231,L356,L192.1,CTS1078) 1068116 1117 1.0 1.0 1.0 1.0
      ERR3324611 NA NA 781639 4084 0 0 0 0
      ERR3324598 NA NA 768388 4102 0.0 0.0 1.0 1.0
      ERR3325054 NA NA 2075838 8359 0.0 0.0 1.0 1.0
      ERR3324695 NA NA 217817 250 0 0 0 0
      ERR3324813 NA NA 3530872 14838 0 0 0 0
      ERR3324922 Q1b Q-CTS8328*(xCTS9004,F5411,FGC6976) 707693 1969 1.0 1.0 1.0 1.0
      ERR3324834 NA NA 712637 917 0.0 0.0 1.0 1.0
      ERR3324729 NA NA 97803 555 0.0 0.0 1.0 1.0
      ERR3324754 NA NA 2402785 10431 0.0 0.0 1.0 1.0
      ERR3324846 NA NA 1903834 8357 0 0 0 0
      ERR3324966 NA NA 1537914 9101 0 0 0 0
      ERR3324684 R1a1a1b~ R-CTS9754*(xYP254,BY32082,Y38007,YP444,YP1699,FGC45975,CTS1211,YP280,FGC55626,YP5466,YP5542,YP4472,YP993,FGC28660,YP1179,Y31833,Y2429,Y19831,FGC23228,FGC31687,YP5324) 228859 1479 1.0 1.0 1.0 1.0
      ERR3325049 NA NA 870951 755 0 0 0 0
      ERR3324892 NA NA 2256175 13695 0.0 0.0 1.0 1.0
      ERR3325037 R1a1a1b2a2a1 R-Z2123*(xY628,YP4924,FGC22471,YP523) 1253968 4689 1.0 1.0 1.0 1.0
      ERR3324574 NA NA 72862 291 0.0 1.0 1.0 0.0
      ERR3324928 NA NA 1980353 8820 0.0 0.0 1.0 1.0
      ERR3325047 NA NA 3208932 12635 0.0 0.0 1.0 1.0
      ERR3325067 NA NA 514079 489 0 0 0 0
      ERR3324707 R1b1a1b R-PF6462*(xYSC0000054,L884.2,FGC13260,S379,S22641,Z222,L356,L564,AM01878,Z29785) 665112 892 1.0 1.0 1.0 1.0
      ERR3324590 NA NA 35936 30 0 0 0 0
      ERR3324690 NA NA 1647873 9968 0.0 0.0 1.0 1.0
      ERR3325032 NA NA 1083163 3864 0.0 0.0 1.0 1.0
      ERR3324981 R1a1 R-M459/etc*(xYP5531,S23297,YP949,S2852,FGC19043,S2887,Y34274,YP287,FGC9997,PF6217,AM00483,Z2123,YP4886,M4367,YP1710,YP1349,S18885,F1345,Y50,Y42,CTS11926,YP5324,YP1507,Y20791,Y34306,YP5586,YP1055,YP1300) 2931195 16158 1.0 1.0 1.0 1.0
      ERR3324790 NA NA 474173 664 0.0 0.0 1.0 1.0
      ERR3324681 R1b1a1b1 R-L23*(xYSC0000054,A6906,Y10790,S1743,S22641,L1231,Z49,L564,L238,FGC37113) 641188 547 1.0 1.0 1.0 1.0
      ERR3325020 NA NA 638021 713 0.0 0.0 1.0 1.0
      ERR3324827 NA NA 1413819 1715 0.0 0.0 1.0 1.0
      ERR3324997 NA NA 249048 361 0 0 0 0
      ERR3325005 NA NA 3988556 17881 0.0 0.0 1.0 1.0
      ERR3324644 NA NA 47820 62 0 0 0 0
      ERR3324955 NA NA 47839 93 0 0 0 0
      ERR3324744 NA NA 388209 1530 0.0 0.0 1.0 1.0
      ERR3324627 NA NA 24111 80 0 0 0 0
      ERR3324740 NA NA 212195 270 0 0 0 0
      ERR3324954 R1b1a1b1 R-L23*(xL884.2,Y7369,S1743,L1231,L356,S6154,BY281,L743,Z18064.1,FGC5654,FGC5782,BY638,FGC33060,L130,L1315) 343005 474 1.0 1.0 1.0 1.0
      ERR3325014 NA NA 200859 200 0 0 0 0
      ERR3324656 R1a1 R-M459*(xCTS7288,Y36768,CTS6596,YP1060,Y12636) 2482536 11643 1.0 1.0 1.0 1.0
      ERR3324809 NA NA 583490 733 0 0 0 0
      ERR3324664 NA NA 698045 573 0 0 0 0
      ERR3324838 NA NA 698243 1023 0.0 0.0 1.0 1.0
      ERR3324599 NA NA 117311 593 0 0 0 0
      ERR3324546 NA NA 3850450 17489 0.0 0.0 1.0 1.0
      ERR3325009 R1b1a1b R-PF6434/etc*(xP311,PF7589,L277.1,S12460,GG480) 1853102 7931 1.0 1.0 1.0 1.0
      ERR3324823 R2a2b1b2b3 R-V3467*(xL294.1) 2052246 7405 1.0 1.0 1.0 1.0
      ERR3325050 NA NA 154369 172 0 0 0 0
      ERR3324635 NA NA 29621 124 0 0 0 0
      ERR3324877 NA NA 3661727 16759 0 0 0 0
      ERR3324537 NA NA 599682 622 0 0 0 0
      ERR3324963 NA NA 142965 177 0 0 0 0
      ERR3324709 R1b1a1b R-PF6436/etc*(xY10790,S1743,S22641,DF27,L356,FGC7998,Z18064.1,Z17836,FGC11793,S844,FGC5782,FGC33973,FGC58892,L1315) 798469 867 1.0 1.0 1.0 1.0
      ERR3324672 NA NA 4050398 18148 0.0 0.0 1.0 1.0
      ERR3324782 NA NA 6442 6 0 0 0 0
      ERR3324979 NA NA 3294185 16610 0.0 0.0 1.0 1.0
      ERR3324795 R2a2b R-FGC12586*(xPF7499,FGC46676) 3013449 13184 1.0 1.0 1.0 1.0
      ERR3324667 R1b1a1b1 R-L23*(xS378,Z21,Y10790,S1743,L1231,L356,Z17836,FGC5654,FGC5782,L130,Z2248) 200274 272 1.0 1.0 1.0 1.0
      ERR3324620 NA NA 13364 12 0 0 0 0
      ERR3324980 NA NA 3330754 16725 0.0 0.0 1.0 1.0
      ERR3324841 NA NA 497312 643 0 0 0 0
      ERR3324682 NA NA 508068 463 0 0 0 0
      ERR3324549 NA NA 2994779 15267 0.0 0.0 1.0 1.0
      ERR3324737 R1b1a1b1b R-Z2105/etc*(xCTS7556) 1108757 6918 1.0 1.0 1.0 1.0
      ERR3324650 R1b1a1b1 R-L23*(xA564,A9452,Y7369,S1746,FGC419,L1231,L356,FGC19851,FGC23592,FGC5606,Z17836,BY404,FGC5654,BY357,FGC5782,BY638,L130,L1315) 906950 932 1.0 1.0 1.0 1.0
      ERR3324860 R1b1a1b R-CTS1416^^/etc*(xY10790,S1743,L1231,L356,L192.1,Z2248,Z29785) 655548 797 1.0 1.0 1.0 1.0
      ERR3325027 NA NA 1055167 941 0.0 0.0 1.0 1.0
      ERR3324606 NA NA 1030198 1063 0 0 0 0
      ERR3324871 NA NA 2981495 14257 0 0 0 0
      ERR3325028 R1 R-CTS3123/etc*(xCTS7559,CTS2134) 1063773 3528 1.0 1.0 1.0 1.0
      ERR3325018 NA NA 47513 57 0 0 0 0
      ERR3324683 NA NA 2974871 17381 0.0 0.0 1.0 1.0
      ERR3324668 NA NA 93811 126 0 0 0 0
      ERR3324624 NA NA 6950 14 0 0 0 0
      ERR3324762 R1b1a1b R-CTS1416^^/etc*(xFGC13260,S378,S1743,S22641,FGC419,L1231,L356,L192.1,CTS1078) 743662 737 1.0 1.0 1.0 1.0
      ERR3324977 NA NA 534689 392 0 0 0 0
      ERR3324658 R1a1 R-Page65.2*(xCTS7288,Y36768,PF6161,YP569,Y1401,YP4356,FGC46023,CTS1211,S443,Y17491,YP5957,F3568,YP5324,YP1506,Y20793,Y35117,Y28677,Y8857,YP1335) 2154062 13423 1.0 1.0 1.0 1.0
      ERR3324706 NA NA 263320 317 0 0 0 0
      ERR3324803 R1b R-CTS46*(xFGC35,BY14578) 574343 750 1.0 1.0 1.0 1.0
      ERR3324655 NA NA 4732146 19168 0 0 0 0
      ERR3325053 R1a1 R-M459/etc*(xCTS7083,FGC10003,PF6217,AM00483,Y662,F998,YP4919,YP4974,Y19762,FGC10207,FGC22471,YP520,YP5906,FGC23228,YP5272,FGC59415,YP1709,S23592,S4576,Y42,CTS11926,YP5324,YP1506,Y20789,Y35119,YP5592,Y8857,YP1322) 4932330 21599 1.0 1.0 1.0 1.0
      ERR3324625 NA NA 3143 5 0 0 0 0
      ERR3324536 NA NA 215015 109 0 0 0 0
      ERR3324619 NA NA 13118 9 0 0 0 0
      ERR3324996 R1a1a1b2a2a1 R-Z2123*(xY935,F998,YP4922,Y29455,Y19763,FGC10207,FGC22471,YP520,FGC23228,FGC59403) 2581580 14873 1.0 1.0 1.0 1.0
      ERR3325012 NA NA 802514 698 0 0 0 0
      ERR3324643 NA NA 1376702 5044 0 0 0 0
      ERR3324804 NA NA 137328 185 0 0 0 0
      ERR3324641 NA NA 10431 23 0 0 0 0
      ERR3324557 NA NA 2981626 15396 0.0 0.0 1.0 1.0
      ERR3324589 NA NA 25482 26 0 0 0 0
      ERR3324604 R1b1a1b R-CTS1416^^/etc*(xS263,L1231,L356,FGC5606,BY23848,L743,A11313,Z17836,BY404,S280,BY638,A7911,Z2248,FGC37092) 953798 1148 1.0 1.0 1.0 1.0
      ERR3324791 NA NA 524413 2354 0.0 0.0 1.0 1.0
      ERR3324920 R1a1a1~ R-F3166*(xS23297,S2856,YP6490,YP5606,YP1214,YP6212,Y4135,BY35662,BY32079,YP5478,Y42176,YP444,YP1135,Y34164,FGC72557,BY27806,BY30638,V3092,FGC55633,YP5945,YP4456,YP4248,Y28770,Y29967,YP4472,Y11819,YP1258,YP411,YP1370,YP718,Y32945,Y928,FGC7398,Y34246,Y34216,YP5557,Y2447,Y940,FGC23228,F1345,CTS9557) 470257 2137 1.0 1.0 1.0 1.0
      ERR3324558 NA NA 4244236 18160 0.0 0.0 1.0 0.0
      ERR3324731 R1b1a1b1a1a2e1a R-L644 934541 960 1.0 1.0 1.0 1.0
      ERR3324674 NA NA 2104907 12384 0 0 0 0
      ERR3324912 NA NA 3448263 16174 0.0 0.0 1.0 1.0
      ERR3324646 NA NA 2914600 12922 0 0 0 0
      ERR3324798 R1b1a1b1a1a2c1a5b1 R-CTS8704*(xFGC5782) 960721 1106 1.0 1.0 1.0 1.0
      ERR3324919 NA NA 1100952 1004 0 0 0 0
      ERR3325021 NA NA 108733 122 0 0 0 0
      ERR3324902 R1a R-L62/etc*(xY177,Y19144) 2863572 15197 1.0 1.0 1.0 1.0
      ERR3324767 NA NA 2222115 11210 0.0 0.0 1.0 1.0
      ERR3324948 R1a R-L62/etc*(xY177,Y19144) 1595898 10149 1.0 1.0 1.0 1.0
      ERR3324578 NA NA 2913097 14415 0 0 0 0
      ERR3324679 NA NA 608833 522 0 0 0 0
      ERR3325001 NA NA 1094131 1032 0 0 0 0
      ERR3324626 NA NA 1112 2 0 0 0 0
      ERR3324533 NA NA 746319 631 0 0 0 0
      ERR3324556 NA NA 3853206 18152 0.0 0.0 1.0 1.0
      ERR3324550 NA NA 643148 2974 0.0 0.0 1.0 1.0
      ERR3324597 NA NA 228613 910 0 0 0 0
      ERR3324773 NA NA 4348230 19635 0.0 0.0 1.0 1.0
      ERR3324766 NA NA 2879422 15688 0.0 0.0 1.0 1.0
      ERR3325052 R1b1a1b1a1 R-CTS7650*(xS263,L1231,L356,L192.1,FGC37092) 861131 734 1.0 1.0 1.0 1.0
      ERR3324621 NA NA 16233 25 0 0 0 0
      ERR3324628 NA NA 35955 104 0 0 0 0
      ERR3324908 NA NA 14748 31 0 0 0 0
      ERR3324893 NA NA 2546305 14164 0 0 0 0
      ERR3324882 R1b1a1b1 R-L23*(xL884.2,FGC30616,FGC13260,S378,S379,S22641,L1231,L356,FGC19851,FGC23592,FGC7998,Z18064.1,Z17836,BY404,A6464,A1334,A206,FGC5637,S3106,CTS8704,BY638,FGC33060,L130,FGC58883,FGC11355,L1315) 1050222 1322 1.0 1.0 1.0 1.0
      ERR3324678 R1a~ R-CTS903/etc*(xY177,YP4214) 2895168 14693 1.0 1.0 1.0 1.0
      ERR3324991 NA NA 688439 598 0 0 0 0
      ERR3324623 NA NA 4469 9 0 0 0 0
      ERR3324932 NA NA 3342740 15848 0.0 0.0 1.0 1.0
      ERR3324986 NA NA 3096553 15194 0.0 0.0 1.0 1.0
      ERR3324660 NA NA 689100 634 0 0 0 0
      ERR3324808 NA NA 733501 879 0 0 0 0
      ERR3324999 R1b1a1b1a1 R-CTS7650*(xYSC0000054,L884.2,Y10790,S22641,L1231,L356,CTS2501,Z18064.1,BY404,CTS8358,FGC5637,BY357,FGC5782,Z16302,FGC33060,FGC33398,Y18213,FGC37113) 986895 1167 1.0 1.0 1.0 1.0
      ERR3324845 NA NA 2779760 14591 0.0 1.0 1.0 0.0
      ERR3324610 NA NA 273140 312 0 0 0 0
      ERR3324879 NA NA 60087 110 0 0 0 0
      ERR3324899 NA NA 433187 361 0 0 0 0
      ERR3324693 NA NA 643510 503 0 0 0 0
      ERR3324665 NA NA 677088 522 0 0 0 0
      ERR3324863 NA NA 207199 267 0 0 0 0
      ERR3324692 NA NA 850086 886 0 0 0 0
      ERR3324596 NA NA 371685 1720 0 0 0 0
      ERR3324982 NA NA 957315 930 0 0 0 0
      ERR3324541 R1b R-CTS46*(xS1743,FGC392,L1231,Z49,FGC19851,FGC7998,A11313,S279,FGC5654,BY357,FGC5782,FGC33060,BY15360,Y21722) 576134 537 1.0 1.0 1.0 1.0
      ERR3324617 NA NA 10882 25 0 0 0 0
      ERR3324969 NA NA 25367 131 0 0 0 0
      ERR3324894 Q1 Q-F1426/etc*(xF5087,CTS5077) 2435288 13087 1.0 1.0 1.0 1.0
      ERR3324732 NA NA 501048 670 0.0 0.0 1.0 1.0
      ERR3325007 NA NA 158059 136 0 0 0 0
      ERR3325064 NA NA 2134100 12642 0.0 0.0 1.0 1.0
      ERR3324832 R1b1a1b1a1 R-CTS7650*(xL884.2,Y10790,Y7369,S1743,L1231,L356,L564,Z2248,AM01878) 1093785 1306 1.0 1.0 1.0 1.0
      ERR3324830 NA NA 1030401 1206 0 0 0 0
      ERR3325041 R1 R-L1352/etc*(xL62,L278) 4407155 18474 1.0 1.0 1.0 1.0
      ERR3324888 NA NA 587478 455 0 0 0 0
      ERR3324799 NA NA 926618 1065 0.0 0.0 1.0 1.0
      ERR3325072 NA NA 19486 55 0 0 0 0
      ERR3324584 NA NA 686679 686 0 0 0 0
      ERR3324983 NA NA 1140496 1310 0 0 0 0
      ERR3324858 NA NA 968315 6128 0 0 0 0
      ERR3324753 R1a1a1b2a2a1 R-Z2123*(xY628,F998,YP4922,FGC10233,FGC22471,YP523,FGC23228,FGC59403) 1260511 5555 1.0 1.0 1.0 1.0
      ERR3325030 R1a1 R-Page65.2/etc*(xS2846,CTS11197,AM00479,SUR2,YP1127,S23592,S4576,Y37,Y38296,Z670,YP5324,YP1506,Y20793,Y34287,YP5582,YP4636,YP1322) 3967676 17431 1.0 1.0 1.0 1.0
      ERR3324923 R1b1a1b R-PF6509/etc*(xCTS7650) 195048 540 1.0 1.0 1.0 1.0
      ERR3325059 NA NA 140391 131 0 0 0 0
      ERR3324881 NA NA 1040629 1305 0 0 0 0
      ERR3324826 NA NA 56784 95 0.0 0.0 1.0 1.0
      ERR3324878 NA NA 35676 139 0.0 1.0 1.0 0.0
      ERR3324806 R1b1a1b R-CTS12478*(xY10790,S1743,S22641,L1231,L356,L459,FGC37092) 607292 681 1.0 1.0 1.0 1.0
      ERR3324592 NA NA 56743 55 0 0 0 0
      ERR3325070 NA NA 4481 7 0 0 0 0
      ERR3324594 NA NA 199592 190 0 0 0 0
      ERR3324924 NA NA 487618 478 0.0 0.0 1.0 1.0
      ERR3324943 NA NA 7230 22 0 0 0 0
      ERR3324540 NA NA 1174645 1190 0 0 0 0
      ERR3325061 NA NA 65253 74 0 0 0 0
      ERR3324613 NA NA 1029526 1004 0 0 0 0
      ERR3324600 NA NA 1649774 11286 0 0 0 0
      ERR3324852 NA NA 2142311 11775 0 0 0 0
      ERR3324661 NA NA 2628676 13910 0.0 0.0 1.0 1.0
      ERR3324945 J2b J-PF7295/etc*(xZ2507,Y29540,Z8313,Y965,Z8386,Z43622) 226455 1034 1.0 1.0 1.0 1.0
      ERR3324539 NA NA 422238 448 0 0 0 0
      ERR3324833 R1b1a1b1a1a2c1a5b1 R-CTS8704*(xFGC5782) 1209872 1339 1.0 1.0 1.0 1.0
      ERR3324543 NA NA 4020947 17829 0.0 0.0 1.0 0.0
      ERR3324905 NA NA 3133226 16407 0.0 0.0 1.0 0.0
      ERR3324890 NA NA 164631 164 0 0 0 0
      ERR3324608 NA NA 326555 269 0 0 0 0
      ERR3324685 R1a R-L62*(xS2852,YP429,S2892,YP5462,Y34263,YP1014,YP4529,YP6043,YP4126,FGC10010,PF6161,BY30753,YP683,VK03,Y1401,BY30793,FGC46023,V3092,L448,F19106,Y30184,YP6460,AM00559,YP5869,YP407,FGC28668,Y37295,YP718,YP5876,L657.1,Y940,YP4912,FGC10207,FGC22482,YP5906,FGC59422,YP1127,FGC31687,Y37891,S3424,FGC113,Y37917,YP626,FGC30903,CTS9557,YP5324,Y20793,Y35119,YP5591,YP1322,YP5031,YP4218) 570192 3951 1.0 1.0 1.0 1.0
      ERR3324629 NA NA 9321 44 0.0 1.0 1.0 0.0
      ERR3324651 NA NA 902035 1015 0.0 0.0 1.0 1.0
      ERR3324917 R1a1a1b2a2a1 R-Z2123*(xFGC22482,FGC59412) 481024 2996 1.0 1.0 1.0 1.0
      ERR3324691 R1a~ R-F3466/etc*(xCTS5437,YP4149) 2334790 11476 1.0 1.0 1.0 1.0
      ERR3324757 R1b1a1b1a1 R-CTS7650*(xL884.2,FGC13260,Y10790,S1743,FGC392,L1231,L356,FGC23592,BY281,Z17836,BY404,FGC29071,FGC5654,S844,BY357,Z30233^^,FGC43488,FGC33060,FGC58892,FGC33372) 1268432 1171 1.0 1.0 1.0 1.0
      ERR3324743 NA NA 528357 1783 0.0 1.0 1.0 0.0
      ERR3324573 NA NA 3237569 15106 0 0 0 0
      ERR3325031 R1a1a1b2a2a1 R-Z2123*(xY609,Y876,YP4920,Y16006,Y37795,YP4974,Y19762,FGC10207,FGC22471,YP520,YP5906,FGC23228,Y19715) 4538145 19295 1.0 1.0 1.0 1.0
      ERR3324758 NA NA 16120 46 0 0 0 0
      ERR3325016 R1b1a1b1a1a2b~ R-L356*(xZ49,S206) 883194 824 1.0 1.0 1.0 1.0
Viewing 0 reply threads
  • You must be logged in to reply to this topic.