Y-SNP calls for Mathieson (2018) The genomic history of southeastern Europe

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      Carlos Quiles
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      Mathieson, I., Alpaslan-Roodenberg, S., Posth, C. et al. The genomic history of southeastern Europe. Nature 555, 197–203 (2018). https://doi.org/10.1038/nature25778

      Accession number: PRJEB22652

      Batch Y-chromosome SNP Calls with Yleaf v. 2.3 from FASTQ files, bwa-mem with hg38 reference, and parameters r=1, q=0, b=0.

      Google Drive.

      Haplogroup.info.

      The following is a list of automated Y-DNA haplogroup predictions obtained with Clean tree v2:

      WARNING: Please note that the haplogroup prediction algorithm works best with modern DNA, and its strict requirements make the prediction rather impractical for ancient DNA – in fact, males usually turn out to have not enough quality for a reliable prediction.

      If anything, positive haplogroup predictions (especially under R1b and I2) will normally turn out to be wrong because they are based on few reads, due to the sample being either a) female or b) low coverage.

      The usual process for checking out Y-chromosome haplogroups in ancient DNA samples is as follows:

      1. Select the male individual you want to check out for in the Ancient DNA Dataset.
      2. Look up its library ID (object-ID) at ENA Browser search form (top right) to obtain the accession number(s) for the available sample(s) corresponding to that individual.
      3. Look for files obtained with Yleaf for that accession number(s); more specifically, look for individual Derived and Ancestral SNPs in the ACCESSION_NUMBER.out or ACCESSION_NUMBER.out.csv documents.

      When in doubt about a specific sample, you can ask a question in this thread.

      ERR2216669 I2 I-CTS12003*(xPF3976,Y17616,A10029,BY1756,Y13600,FGC12084,Y29077,Y12715,P95,BY13372,Y18116,Y16754,S19763,Y130087,BY14051,Y90701) 109253 603 1.0 1.0 1.0 1.0
      ERR2216707 NA NA 269742 147 0 0 0 0
      ERR2216735 NA NA 2524999 13408 0 0 0 0
      ERR2216581 NA NA 37574 59 0 0 0 0
      ERR2216679 NA NA 1380417 7401 0.0 0.0 1.0 1.0
      ERR2216851 NA NA 904595 854 0 0 0 0
      ERR2216853 NA NA 962896 927 0 0 0 0
      ERR2216510 NA NA 24632 46 0 0 0 0
      ERR2216681 NA NA 1301027 6263 0 0 0 0
      ERR2216933 NA NA 3358300 18113 0.0 0.0 1.0 0.0
      ERR2216713 NA NA 641088 644 0.0 0.0 1.0 1
      ERR2216745 R1b1a1b1a1 R-CTS7650*(xS263,L1231,CTS1595,FGC5596,L743,FGC11793,CTS8358,S3028^^,FGC5782,L130) 676681 683 1.0 1.0 1.0 1.0
      ERR2216895 NA NA 1185907 7508 0.0 0.0 1.0 1.0
      ERR2216743 NA NA 1585318 1792 0 0 0 0
      ERR2216543 NA NA 241909 1676 0.0 1.0 1.0 0.0
      ERR2216514 NA NA 656629 2175 0 0 0 0
      ERR2216815 NA NA 2366098 10814 0 0 0 0
      ERR2216605 NA NA 194121 282 0 0 0 0
      ERR2216775 NA NA 280998 315 0.0 1.0 1.0 0.0
      ERR2216725 NA NA 2784138 14870 0 0 0 0
      ERR2216873 NA NA 510173 446 0 0 0 0
      ERR2216693 R1b1a1b R-CTS1415^^/etc*(xYSC0000054,A112,Y10790,S1743,S22641,L1231,L356,L564,AM01878,FGC37113) 771384 837 1.0 1.0 1.0 1.0
      ERR2216907 R1b1a1b1b R-CTS1078/etc*(xCTS7822) 1765876 10477 1.0 1.0 1.0 1.0
      ERR2216931 NA NA 196656 905 0 0 0 0
      ERR2216811 NA NA 3975499 18504 0 0 0 0
      ERR2216917 R1b1b R-FGC20963/etc*(xPF6331,FGC21029) 548366 4121 1.0 1.0 1.0 1.0
      ERR2216585 NA NA 3203664 17155 0 0 0 0
      ERR2216665 R1b1a1b R-CTS1415^^/etc*(xFGC36479,DF27,L356,L192.1,FGC37092,BY16684) 1253157 1495 1.0 1.0 1.0 1.0
      ERR2216643 NA NA 1991125 12311 0 0 0 0
      ERR2216921 R1b1 R-PF6249*(xL388,Y8441) 260923 1432 1.0 1.0 1.0 1.0
      ERR2216521 NA NA 1319962 1633 0.0 0.0 1.0 1.0
      ERR2216627 NA NA 1092925 7334 0.0 0.0 1.0 1.0
      ERR2216891 NA NA 14556 18 0 0 0 0
      ERR2216819 NA NA 3858180 17984 0.0 0.0 1.0 1.0
      ERR2216861 NA NA 149650 105 0 0 0 0
      ERR2216647 R1b1a1b R-CTS1415^^/etc*(xYSC0000054,L884.2,FGC13260,Y10790,S1743,L276,L356,S6154,BY281,A11313,Z17836,A6464,A153,CTS8704,FGC33060,BY35673,L1315,A7911,ZZ38) 466479 626 1.0 1.0 1.0 1.0
      ERR2216909 NA NA 44921 54 0 0 0 0
      ERR2216715 NA NA 2788625 14669 0 0 0 0
      ERR2216555 R1b R-L1349*(xL884.2,Y7369,S22641,DF27,L356,BY281,Z18064.1,FGC11355,FGC33372,BY15360,Y24710,BY17639) 287767 384 1.0 1.0 1.0 1.0
      ERR2216501 NA NA 55694 261 0 0 0 0
      ERR2216569 NA NA 158612 119 0 0 0 0
      ERR2216923 R1b1b R-PF6309*(xY18459,FGC21007) 199005 879 1.0 1.0 1.0 1.0
      ERR2216671 NA NA 275762 1460 0.0 0.0 1.0 0.0
      ERR2216641 NA NA 1598641 10169 0.0 0.0 1.0 0.0
      ERR2216667 NA NA 111725 641 0 0 0 0
      ERR2216597 R1b1a1b R-CTS1416^^/etc*(xS18461,S383,S1743,S22641,L356,FGC5606,A11313,Z18064.1,Z17836,BY404,FGC5654,BY357,CTS8704,FGC43487,FGC33060,L644,FGC37083) 406246 636 1.0 1.0 1.0 1.0
      ERR2216885 I2a1b1~ I-CTS1616*(xFGC20036,FGC14250,S25360,S23897,FGC3582) 182413 1171 1.0 1.0 1.0 1.0
      ERR2216589 NA NA 1404768 9839 0 0 0 0
      ERR2216535 NA NA 463249 3414 0 0 0 0
      ERR2216849 R1b1 R-FGC41/etc*(xPF6451,BY15370,PF6304) 3505268 16418 1.0 1.0 1.0 1.0
      ERR2216833 NA NA 3830363 17064 0.0 0.0 1.0 1.0
      ERR2216617 NA NA 2013806 13395 0 0 0 0
      ERR2216761 NA NA 606921 584 0 0 0 0
      ERR2216651 NA NA 11883 15 0 0 0 0
      ERR2216659 NA NA 1654438 7959 0 0 0 0
      ERR2216821 NA NA 889015 766 0 0 0 0
      ERR2216829 NA NA 4622250 20843 0 0 0 0
      ERR2216731 NA NA 2754586 14439 0 0 0 0
      ERR2216631 NA NA 3208026 17093 0 0 0 0
      ERR2216673 NA NA 1102851 6728 0.0 0.0 1.0 1.0
      ERR2216843 NA NA 3585993 16789 0.0 0.0 1.0 1.0
      ERR2216529 C1 C-F3393*(xZ7143,Z16477,Z32679,Z33024,Z31786,Z31792,Z31884) 644685 3061 1.0 1.0 1.0 1.0
      ERR2216879 R1b1 R-CTS8436/etc*(xCTS3876,BY15390,FGC21059) 949625 6789 1.0 1.0 1.0 1.0
      ERR2216537 NA NA 94874 136 0 0 0 0
      ERR2216817 NA NA 3933253 18101 0 0 0 0
      ERR2216887 I2a1b1~ I-CTS1616/etc*(xY27465,Z2067,Y5376,Y7225,P95,Y7399,Y23403,Y24170,Y15788,Y33725,CTS6433,Y14990,Y5222,S9403) 448711 2838 1.0 1.0 1.0 1.0
      ERR2216867 NA NA 418601 426 0 0 0 0
      ERR2216799 NA NA 3740871 17279 0 0 0 0
      ERR2216645 NA NA 705734 900 0 0 0 0
      ERR2216875 R1b1a1b1a1 R-CTS7650*(xS263,L1231,L356,L459) 651702 570 1.0 1.0 1.0 1.0
      ERR2216899 R1b1b R-FGC21012/etc*(xPF6331) 284445 1578 1.0 1.0 1.0 1.0
      ERR2216905 NA NA 340907 2140 0.0 0.0 1.0 1.0
      ERR2216901 NA NA 183338 959 0.0 1.0 1.0 0.0
      ERR2216863 NA NA 753284 610 0 0 0 0
      ERR2216533 NA NA 111747 52 0 0 0 0
      ERR2216509 NA NA 80407 600 0 0 0 0
      ERR2216587 I2a I-CTS4039/etc*(xAM00519,CTS8799,L597) 803501 5586 1.0 1.0 1.0 1.0
      ERR2216541 NA NA 2567541 14507 0.0 0.0 1.0 1.0
      ERR2216613 NA NA 238805 260 0 0 0 0
      ERR2216717 NA NA 2750598 14734 0.0 0.0 1.0 1.0
      ERR2216505 G2a2b G-Z3238*(xM3249,Z31562,Z31374,Z44050,Y56509,SK1142,Z1818,CTS2762,Z6977,FT13236,Z31245,Z44944,Z40577,Z6371,Y71567,FT10461,FT19244,Z7042,FGC82094,FGC52664) 134527 662 1.0 1.0 1.0 1.0
      ERR2216797 NA NA 4115911 17622 0 0 0 0
      ERR2216519 NA NA 4614539 17954 0 0 0 0
      ERR2216831 R1b R-CTS46*(xBY15613,YSC0000054,DF96,A112,S383,S1746,S22641,L1231,S6154,L743,Z16330,S279,CTS8358,FGC5654,S3106,CTS8704,FGC43487,L130,FGC58892,FGC11355,L1315,Z2248,BY16684,Z29785,BY21442,PF6368,Y7779,FGC20964,BY17639) 1011976 975 1.0 1.0 1.0 1.0
      ERR2216877 NA NA 405096 3085 0 0 0 0
      ERR2216809 NA NA 886981 774 0 0 0 0
      ERR2216657 R1b1a1b1a1 R-CTS7650*(xS263,L1231,L356,L459) 554110 483 1.0 1.0 1.0 1.0
      ERR2216729 NA NA 2455340 13693 0 0 0 0
      ERR2216701 R1b1b R-PF6301/etc*(xSK2068,Y21724) 133190 694 1.0 1.0 1.0 1.0
      ERR2216911 I2a1b1a2a I-L702*(xS23612) 207033 995 1.0 1.0 1.0 1.0
      ERR2216773 NA NA 1999366 9708 0 0 0 0
      ERR2216511 NA NA 892626 5148 0 0 0 0
      ERR2216889 NA NA 200060 1171 0.0 1.0 1.0 0.0
      ERR2216507 NA NA 110470 51 0 0 0 0
      ERR2216689 NA NA 2747444 14957 0.0 0.0 1.0 1.0
      ERR2216593 NA NA 60783 264 0 0 0 0
      ERR2216577 G2a2b2a G-PF3330/etc*(xPF3337,Z44944,Y84979.2) 333323 2095 1.0 1.0 1.0 1.0
      ERR2216747 NA NA 3280063 16961 0 0 0 0
      ERR2216621 NA NA 63032 85 0 0 0 0
      ERR2216935 NA NA 816027 702 0 0 0 0
      ERR2216683 G2a2b2a G-CTS10366*(xZ38859,BY204741,Z30779,Z31368,FT63179,Y52166,Z31362,L1268,PH3061,Z45656,F1300.2,Z31314,Z45257,Z40854,Z45553,Y112111,BY103057,BY199256,FT67149,FT21560,FT48318,FT55772,Z40765,Z45548,Z17778,FGC14523,BY28014,Z31328,Z39672,Z30727,BY180266,FT53577,FGC512,BY27899.1,Z40923,Z44687,BY197025,BY186162,Y56052,CTS4472,L660,Z16677,FGC37761,FGC65075,Y58532,Z44982,Z39650,Z6371,Z40469,BY200239,BY74451,FT53199) 248525 1807 1.0 1.0 1.0 1.0
      ERR2216789 NA NA 3300024 16824 0 0 0 0
      ERR2216559 R1b1a1b R-CTS1416^^/etc*(xL884.2,S383,S1746,L1231,L356,FGC7998,L743,FGC5637,BY357,Z16303,FGC43488,FGC63907,BY16694) 403010 447 1.0 1.0 1.0 1.0
      ERR2216523 NA NA 2495103 12815 0 0 0 0
      ERR2216763 R1 R-L1352*(xL62,CTS7400,PF6312) 95427 622 1.0 1.0 1.0 1.0
      ERR2216503 NA NA 944991 5776 0 0 0 0
      ERR2216575 R1b1a1b1 R-L23*(xYSC0000054,AMM277,CTS9539,S1743,S22641,L1231,Z49,L192.1) 701991 659 1.0 1.0 1.0 1.0
      ERR2216845 R1b1a1b R-CTS1415^^/etc*(xFGC14886,L884.2,Z160,Y10790,CTS9539,S1743,S22641,FGC392,L1231,L356,L564,L644,PF7558) 868470 819 1.0 1.0 1.0 1.0
      ERR2216765 NA NA 14747 24 0 0 0 0
      ERR2216513 NA NA 27997 220 0.0 1.0 1.0 0.0
      ERR2216579 NA NA 122969 715 0.0 0.0 1.0 1.0
      ERR2216719 NA NA 685447 631 0 0 0 0
      ERR2216653 E1b1b1~ E-M5115*(xV32,CTS4366,Z21227,CTS5856,CTS11457,AM00057,M5272,PF6746,CTS841,CTS10942,Y17588) 44982 392 1.0 1.0 1.0 1.0
      ERR2216779 NA NA 690049 586 0 0 0 0ERR2216759 NA NA 2409691 14283 0 0 0 0
      
      ERR2216783 R1b1a1b R-L150.1*(xYSC0000054,S263,FGC390,L1231,L356,Z260) 732081 715 1.0 1.0 1.0 1.0
      ERR2216913 I2a1b I-L37*(xL137.1,FGC14274,Y20864,Y7244,Y13907,S23897,Y7225,CTS4693,Y6101,S2599) 201159 1025 1.0 1.0 1.0 1.0
      ERR2216675 I2a1b1~ I-CTS10093*(xY4160,S25360,Y12037,CTS7934,Y30846,Y5223) 187794 1155 1.0 1.0 1.0 1.0
      ERR2216859 NA NA 2966728 15373 0 0 0 0
      ERR2216691 R1b1 R-FGC41/etc*(xP297,V2146,PF6309) 778182 4235 1.0 1.0 1.0 1.0
      ERR2216567 NA NA 2728895 15487 0.0 0.0 1.0 1.0
      ERR2216583 R1a1 R-Page65.2*(xS2846,PF6161,S204,S443,Y17491,Y32945,F3568,YP5324,YP1507,Y20793,Y35119,YP5587,YP1059,YP1301) 2772242 15890 1.0 1.0 1.0 1.0
      ERR2216795 NA NA 3863703 17788 0 0 0 0
      ERR2216705 I2~ I-PF3810*(xZ26555,PF4282,PF4342,Z26880,Y23409,S21204,Y22823,M423,S25360,CTS10057,S11558,Y88850,BY44746,S11561,FGC18544,BY2193,BY47824,Z45438) 115985 691 1.0 1.0 1.0 1.0
      ERR2216927 NA NA 27574 36 0 0 0 0
      ERR2216751 NA NA 1114656 5835 0.0 0.0 1.0 1.0
      ERR2216571 NA NA 433777 462 0 0 0 0
      ERR2216825 NA NA 554330 510 0 0 0 0
      ERR2216883 NA NA 61477 254 0 0 0 0
      ERR2216512 NA NA 841924 5234 0.0 0.0 1.0 1.0
      ERR2216547 NA NA 44502 71 0 0 0 0
      ERR2216607 NA NA 296598 403 0 0 0 0
      ERR2216539 NA NA 67200 97 0 0 0 0
      ERR2216871 R1b1a1b R-CTS12478/etc*(xYSC0000054,L884.2,S18461,Y10790,Y7369,CTS9539,S22641,L1231,L356,L192.1,Z2248,FGC37113,FGC31939) 794994 975 1.0 1.0 1.0 1.0
      ERR2216787 NA NA 731233 640 0 0 0 0
      ERR2216932 NA NA 225950 973 0 0 0 0
      ERR2216785 R1b1a1b1a1 R-CTS7650*(xZ369,L884.2,S1743,S22641,L1231,L356,L192.1,Z2248) 581101 652 1.0 1.0 1.0 1.0
      ERR2216739 NA NA 1605321 8387 0.0 0.0 1.0 0.0
      ERR2216515 NA NA 2210720 9328 0.0 0.0 1.0 1.0
      ERR2216553 NA NA 534434 607 0 0 0 0
      ERR2216741 R1b1a1b1a1a2c1a~ R-L564*(xFGC19851,FGC23592,A11313,Z18489,BY404,FGC5654,S844,FGC33973,FGC33060) 574794 623 1.0 1.0 1.0 1.0
      ERR2216805 NA NA 920274 778 0 0 0 0
      ERR2216637 NA NA 3118847 16309 0 0 0 0
      ERR2216563 NA NA 2194314 12985 0 0 0 0
      ERR2216603 NA NA 21104 98 0 0 0 0
      ERR2216649 G2a2a1a2a G-PF3237*(xPF3239,BY47532,Y140842,FGC2358) 707067 2638 1.0 1.0 1.0 1.0
      ERR2216695 NA NA 3197765 15632 0 0 0 0
      ERR2216791 NA NA 2991723 16456 0 0 0 0
      ERR2216755 R1b1a1 R-L502/etc*(xY13202,PF6452) 2369128 13705 1.0 1.0 1.0 1.0
      ERR2216661 R1b1a1b1b R-Z2105*(xCTS9219) 1105482 5989 1.0 1.0 1.0 1.0
      ERR2216633 NA NA 618368 710 0 0 0 0
      ERR2216915 NA NA 13862 13 0 0 0 0
      ERR2216639 NA NA 143594 192 0 0 0 0
      ERR2216549 NA NA 120233 191 0 0 0 0
      ERR2216737 NA NA 652678 694 0.0 0.0 1.0 1.0
      ERR2216677 NA NA 1319847 7366 0.0 0.0 1.0 0.0
      ERR2216781 R1b1a1b1 R-L23*(xZ160,S1746,S22641,L1231,L356,L192.1,AM01878) 685326 651 1.0 1.0 1.0 1.0
      ERR2216551 NA NA 511587 2164 0 0 0 0
      ERR2216687 NA NA 2671959 14927 0 0 0 0
      ERR2216723 R1b1a1b R-PF6503*(xS263,L1231,L356,L564,Y31335^^) 599844 589 1.0 1.0 1.0 1.0
      ERR2216663 NA NA 1013348 1182 0 0 0 0
      ERR2216595 NA NA 21721 17 0 0 0 0
      ERR2216499 NA NA 53051 322 0 0 0 0
      ERR2216793 NA NA 3863766 17619 0 0 0 0
      ERR2216837 NA NA 737842 768 0.0 0.0 1.0 1.0
      ERR2216609 NA NA 70787 96 0 0 0 0
      ERR2216865 R1b1 R-A702/etc*(xPF6451,BY21441,FGC20999) 1777313 8196 1.0 1.0 1.0 1.0
      ERR2216531 NA NA 718825 635 0 0 0 0
      ERR2216525 NA NA 851259 4847 0 0 0 0
      ERR2216823 NA NA 3151402 17264 0 0 0 0
      ERR2216635 NA NA 3175254 16411 0.0 0.0 1.0 0.0
      ERR2216897 NA NA 98891 690 0 0 0 0
      ERR2216847 R1b1a1b R-L150.1*(xZ369,Y10790,Y7369,S1743,S22641,L1231,L356,L564,CTS300,Z44612,BY16691,Z29785) 883153 974 1.0 1.0 1.0 1.0
      ERR2216749 NA NA 1021737 4457 0.0 0.0 1.0 0.0
      ERR2216934 NA NA 3793566 19538 0 0 0 0
      ERR2216591 NA NA 139887 814 0.0 0.0 1.0 1.0
      ERR2216835 NA NA 1023775 859 0 0 0 0
      ERR2216655 R1b1a1b1 R-L23*(xYSC0000054,S263,L1231,Z29612,FGC5007,FGC7998,L743,FGC11793,CTS8704,FGC33060,L130,L1315) 681766 615 1.0 1.0 1.0 1.0
      ERR2216925 NA NA 223286 964 0.0 0.0 1.0 0.0
      ERR2216699 R1b1a1b R-M4435*(xFGC13260,Y7369,S1743,S22641,L1231,L356,L459,AM01878) 506244 562 1.0 1.0 1.0 1.0
      ERR2216855 R1b1a1b1a1a2c1a4b4 R-S844 875040 951 1.0 1.0 1.0 1.0
      ERR2216777 NA NA 126039 126 0 0 0 0
      ERR2216685 R1b1a1b1a1 R-CTS7650*(xFGC14886,A564,YSC0000054,L884.2,A112,S18461,S383,S1743,S22641,FGC419,L1231,L356,L192.1,Z2248,FGC37092) 1607405 2243 1.0 1.0 1.0 1.0
      ERR2216573 NA NA 520844 2705 0 0 0 0
      ERR2216929 NA NA 2154910 12582 0.0 0.0 1.0 1.0
      ERR2216557 NA NA 2536719 14432 0.0 0.0 1.0 1.0
      ERR2216625 I2a I-PF3798/etc*(xCTS4643,CTS9139,Y6098,S2501,FGC18579) 304991 2254 1.0 1.0 1.0 1.0
      ERR2216801 NA NA 3724955 16246 0 0 0 0
      ERR2216839 R1b1 R-A702/etc*(xL388,FGC20972) 3678633 17241 1.0 1.0 1.0 1.0
      ERR2216619 NA NA 211992 262 0 0 0 0
      ERR2216733 NA NA 3009406 15678 0.0 0.0 1.0 1.0
      ERR2216517 NA NA 4159328 16951 0 0 0 0
      ERR2216703 NA NA 1482598 9460 0.0 0.0 1.0 1.0
      ERR2216767 NA NA 47389 46 0 0 0 0
      ERR2216711 NA NA 2638290 14013 0 0 0 0
      ERR2216893 NA NA 1371759 7219 0 0 0 0
      ERR2216757 NA NA 64461 93 0 0 0 0
      ERR2216813 R1b1a1b1a1 R-CTS7650*(xS263,L276,L356,Z260,Z2248) 519540 654 1.0 1.0 1.0 1.0
      ERR2216623 I2a I-CTS4039*(xZ27160,CTS2180,BY25379,SK1270) 37880 174 1.0 1.0 1.0 1.0
      ERR2216565 NA NA 3038969 15878 0 0 0 0
      ERR2216827 R1b1a1b1a1 R-CTS7650*(xFGC14886,YSC0000054,Z4716,Y10790,FGC19768,Y7369,Z83,S22641,L1231,Z49,PF6578,L459,Z2248,FGC37113) 518625 397 1.0 1.0 1.0 1.0
      ERR2216709 NA NA 19766 10 0 0 0 0
      ERR2216753 NA NA 1924838 12293 0.0 0.0 1.0 1.0
      ERR2216919 R1b1b R-PF6309 70442 255 1.0 1.0 1.0 1.0
      ERR2216869 NA NA 2319200 12171 0.0 0.0 1.0 1.0
      ERR2216841 NA NA 4034247 17576 0 0 0 0
      ERR2216615 NA NA 1403401 9669 0.0 0.0 1.0 1.0
      ERR2216769 NA NA 13134 29 0 0 0 0
      ERR2216697 NA NA 219599 204 0 0 0 0
      ERR2216527 NA NA 38054 61 0 0 0 0
      ERR2216857 NA NA 1446294 6855 0 0 0 0
      ERR2216803 NA NA 1013341 1040 0 0 0 0
      ERR2216936 NA NA 544478 2022 0.0 0.0 1.0 1.0
      ERR2216881 NA NA 207710 1036 0.0 0.0 1.0 0.0
      ERR2216771 R1b1 R-CTS4244*(xAM01884,S265,Y10790,S20054,S23231,S1743,S25186,L1231,FGC5524,Y31469,FGC21057) 77348 465 1.0 1.0 1.0 1.0
      ERR2216601 I2a1b1a2b1~ I-FGC3574*(xY11921,M8963.2,Y11154,Y33288,Y7209) 173124 1060 1.0 1.0 1.0 1.0
      ERR2216721 NA NA 2577447 14364 0.0 0.0 1.0 1.0
      ERR2216903 NA NA 117064 119 0 0 0 0
      ERR2216807 NA NA 971770 4821 0 0 0 0
      ERR2216545 NA NA 114949 602 0 0 0 0
      ERR2216599 NA NA 533341 3463 0 0 0 0
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